Anoplopoma fimbria (sablefish): 129090076
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Entry
129090076 CDS
T09102
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03020
RNA polymerase
afb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129090076 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
129090076 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129090076 (polr2b)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129090076 (polr2b)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129090076 (polr2b)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129090076 (polr2b)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129090076 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
129090076
NCBI-ProteinID:
XP_054453554
LinkDB
All DBs
Position
4:complement(27933067..27950823)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDPQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagatcctcagtacgacgaggacgaagatgaaatcactccagat
ttgtggcaggaagcttgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cgacagcagctggactcctttgatgagttcatccagatgtcggttcagaggatcgtggag
gacgcgccgcccatcgacctgcaggctgaagcccagcacacctcaggagaggtggaggag
ccgcctcgttacctgctgaagtttgagcagatttacctgtcgaagccgacccactgggag
agagacggagctccgtctcccatgatgcccaacgaagctcgactgagaaacctcacgtac
tcggcccccctttatgttgacatcacaaagaccatcataaaggagggtgaggaccagctg
cagactcagcaccagaagaccttcattggtaaaattcccatcatgcttcgctccacctac
tgtctgctgagcggcctgacggaccgagacctgtgtgagctcaacgagtgtccgctcgac
cccggaggctatttcatcattaacggctctgagaaggtgctgattgctcaggaaaagatg
gccaccaacacggtgtatgtttttgccaagaaggactctaagtacgcatacacaggtgag
tgtcggtcctgtttggagaactcttcccgtcccaccagcaccatctgggtcagcatgatg
gccagaggaggacagggagtgaagaagagtgccatcggtcagaggatcgtgtccacgctg
ccctacatcagacaggaagttcccatcatcatcgtgtttcgagcgctgggcttcgtgtca
gacagagacatccttgaacacatcatctatgactttgacgacccagagatgatggagatg
gtgaagccgtctctggacgaagcgtttgtgatccaggagcagaatgtggcgttgaacttt
atcggttccagaggagcgaaacccggagtgacgaaagaacgaagaatcaaatatgcaaaa
gaagttctgcagaaagagatgctgccgcatgtcggagtcagcgacttctgtgagaccaag
aaggcctacttcttagggtacatggtgcataggttgctgctggctgctctaggcagacga
gagctggacgacagagatcactatggcaacaagagactggacctggctgggccgctattg
gccttcctgttcagaggcatgtttaagaacctgctaaaggagatcaggatttacgctcag
aagtttatcgacagaggaaaagacttcaacctggagctcgctattaaaaccagaatcatc
tcagatggcctgaagtactcactggccactggaaactggggggatgtgaagaaggctcac
caggcccgagccggagtgtcacaggtgttgaaccgtctgaccttcgcttccactctgtcc
catctccgccgagtcaactctccaatcggcagagacggaaaactggcaaaacccagacag
cttcacaacaccctgtggggaatggtgtgtccggcagagacgcccgagggtcacgctgtg
ggtctggtgaagaacttggcccttatggcctacatctctgtgggctctcagccgtctccc
atcctggagtttctggaggaatggagtatggagaacttggaggagatctcccctgctgcc
atcgcagacgccactaagatctttgtgaacggttgctgggtaggaatccacaaagatccc
gaacaactgatgaacacactgaggaaacttcgcagacagatggacatcatcgtgtccgag
gtatcaatgatcagagacatcagagaacgtgagatcagaatttacacggatgctggacga
atctgccgaccactactgatcgtcgagaaacagaaactactgctgaagagacgccacatc
gaccagctgaaggaaagagagtacaacaactacagctggcaggatttagtggctagcggt
gtagtggagtacatcgacactctggaggaggagacagtgatgctcgccatgacccccgat
gacctccaggaaaagggcgtggcctactgctccacttatacgcattgtgagatccacccg
tccatgatcctcggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
aggaacacgtaccagtctgctatgggtaaacaggccatgggtgtctacatcacaaacttc
catgtacgaatggacacactggctcacgtattgtactaccctcagaaaccgctggtcacg
acccgatcaatggagtacctgcgctttagggagcttcccgcaggtatcaactccattgtg
gcgattgcatcgtacacaggatacaatcaggaggactctgtgatcatgaacaggtcggcc
gtggatcggggcttcttcaggtctgttttctatcgatcctacaaagagcaggagtctaag
aaaggttttgatcaggaggagatctttgagaagccgacacgtgaaacatgtcagggtatg
agacacgccatctacgacaagctagatgatgacgggcttatcgcgcccggtgttcgtgtc
tccggtgaggacgtgatcatcgggaagactgtgacgctgccagagaacgacgacgagctg
gacagcaccaaccgtcgctacaccaagagagactgcagcacttttctgagaaccagcgag
accggcatcgtggaccaggtgatggtgactctgaaccaggagggctacaagttctgcaag
atcagggttcgctcagtgaggattcctcagattggagacaagttcgccagccgtcacgga
cagaaaggaacctgtgggatccagtaccgacaggaggacatgccgttcacctgcgaagga
atcacacctgacatcatcataaaccctcacgccatcccgtccagaatgacagtcggccat
ctgatcgagtgtctgcagggcaaggtttctgcaaacaaaggtgagatcggtgatgccacg
ccgtttaatgacgccgtcaatgtgcagaaagtgtcgaaccttctgtctgaatatggatac
cacctgagaggaaacgaggttttgtataacgggttcacggggaggaaactgacgtctcag
atcttcattggtccgacttattaccagcgtctgaagcacatggttgacgataagatccac
tccagggcccgtggccccgtccagatcctcaacagacagccaatggagggacgatcacgg
gatggcggtttgcggtttggggagatggagcgtgactgtcagatcgctcacggagcggct
cagttcctcagggaacgtctgtttgaggcgtctgatccgtatcaagttcacgtgtgtaat
ctgtgcggactgatggccatcgccaacacgcggacgcacacctatgagtgtcgtggatgc
cgcaacaagacacagatctctctggttcggatgccgtacgcctgtaagcttcttttccag
gagttgatgtcaatgagcattgctcctcgtatgatgacgtcatag
DBGET
integrated database retrieval system
