Anoplopoma fimbria (sablefish): 129090142
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Entry
129090142 CDS
T09102
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129090142
09122 Translation
03013 Nucleocytoplasmic transport
129090142
03015 mRNA surveillance pathway
129090142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129090142
03041 Spliceosome [BR:
afb03041
]
129090142
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
129090142
Spliceosome [BR:
afb03041
]
Common components
Common spliceosomal components
Cap binding complex
129090142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Importin_rep_6
Vfa1
DUF1690
FapA
AAA_11
tRNA_bind_2
DUF4407
Motif
Other DBs
NCBI-GeneID:
129090142
NCBI-ProteinID:
XP_054453651
LinkDB
All DBs
Position
4:24010369..24019194
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDSENEGSQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEA
DLPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNN
LYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSCLPW
VGKELYEKKDVEMDRLLSQIEGYLKGRVKTHVPMLQVWTAEKPHPQEEYLDCLWSQIQKL
KKDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDAQYPMPRVVFRMFDYTDAPE
GPVMPGSHSVERFVIEENLHCIINTHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGEL
FQLPTAPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTSCIDRLVNWFSH
HLSNFQFRWSWDDWSDCLTMDLEKPKPKFVKEVLEKSMRLSYHQRMVDIVPATFSALIPA
EPIFTYKYDDESGSSLPGYPASITVGNAIKNRASNEEILTILKEVPNPNQEDDDDEGESF
NPLKIDVFLQSLLHLAAKSFSHSFSALGKFHEILKTLTDRDEGKLHILKVVYEVWINHPQ
MIAVLVDKLIRTQIVNCAAVANWLFSQDMAHEFTRLFVWEILHSTIRKMNKHVQKIQQEL
EEAKDKLDKQQHKKKDSGDDEEMDKNSEDEEGQLEEQIDRLQEKVESAQSEQKNLFLVIF
QRFIMLLTEHLVRCETGSVDISTPWYKNCIERLQQVFLMHHVTIQQYMGTLENLLFTAEL
DPHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaagacggcacagcgacagcgagaatgagggaagtcaaccacataaaaggagg
agaacgtcggagcccattgaaattgaagaccgcctggagtctctgatatgtcgagtgggg
gagaagagtacatcgtccctggagagcaacctggagggcctagcaggcgtgttggaggcc
gaccttccaaactacaaaaacaaaatcctgcgcattctatgtgctgtcgcccgcctcctg
cctgagaagctgaccgtgtatacgactctagtgggcctcttgaacgccaggaactacaac
tttgggggcgagtttgtggaggcgatgatcagacagctcaaggagacgctgaaaaacaac
ctgtacaatgaagctgtttacttggtgcgttttctgtctgacttggtcaactgccatgtg
atcgctgctccttcaatggtggccatgtttgaaaactttgtcagtgttactcaagaggaa
gatgtacctcaggtccggtccgactggttcgtgtatgtggttctgtcctgtctgccctgg
gtcgggaaggagctctacgagaagaaggatgtcgagatggaccgactgctcagccagatc
gaaggctacctaaagggccgggtaaagacacacgtccccatgctgcaggtgtggacagca
gagaagccccacccacaagaggagtacctggactgcctttggtcccagatccagaagcta
aagaaggaccgctggcaggagcgccacatcctccgcccgtacatcgccttcgacagcgtg
ctgtgcgaggccctgcagcacaacctgccccccttcaccccgccgggccacatgcccgac
gcccagtaccccatgccccgggtcgtcttccgcatgttcgactacaccgatgcccccgag
ggtcccgttatgcccggcagccattctgtggagagatttgtcatagaagaaaacctgcac
tgtatcatcaacactcactggaaagagaggaaaacatgtgctgcccagttactcagctac
cctgggaaaaataagatcccgctcaactatcacatcgtggaggtgatcttcggagaactt
ttccagctgccaactgctcctcacatcgacgtcatgtacacgacgctgcttattgagctc
tgcaaactgcagccgggatcactgccacaagttttggcccaagccacagagatgctgtac
atgagactggacaccatgaacaccagctgcatagaccgactagtcaactggttttctcat
cacttgagcaacttccagttccgatggagctgggatgactggtctgactgcctgaccatg
gatctagagaagcccaagcccaagtttgtcaaagaggttctggagaagagtatgaggctt
tcataccatcagcgcatggtggacatcgtcccggcaaccttctcagcactcatcccagcc
gaacccatctttacctacaaatacgatgatgagagcggctcttcgttaccaggttaccca
gcatccatcactgtcggaaacgccataaagaaccgagcatccaacgaggagatcctgacc
atcctcaaagaagtgcccaaccccaaccaagaagatgatgacgacgagggagagagcttc
aaccctctgaagatcgacgtgttcctgcagtctctgctgcacctggcagccaaatccttc
agccactccttcagtgccctcggaaagttccatgagatcctgaagaccctgacggaccgc
gacgaggggaagctgcacatcctgaaggtggtttatgaagtgtggattaatcacccgcag
atgatcgctgtgttggtggacaagctgattcggacacagatcgtgaactgtgccgccgtg
gccaactggctcttctctcaggatatggctcatgagttcaccagacttttcgtttgggag
attctgcactcgaccatccgaaagatgaacaagcacgtccagaagatccagcaggagttg
gaggaggccaaggacaaactggacaaacagcagcataagaagaaggacagcggggacgac
gaggaaatggacaagaacagcgaggacgaggagggacagttggaggagcagatcgatcgg
ctacaggagaaggtggagtcggctcagagcgaacagaagaacctcttcctcgtcatcttc
cagcgtttcatcatgttgttgacggagcacctggttcgctgtgagacgggcagcgtggac
atcagcacgccgtggtacaagaactgtatcgagaggctgcagcaggtctttctcatgcac
catgtgaccatccagcagtacatgggaaccctggagaacctgctgttcaccgcagagctc
gacccccacatcctggccgtgtaccagcagttctgtgccctccagctctga
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