KEGG   Anoplopoma fimbria (sablefish): 129090257
Entry
129090257         CDS       T09102                                 
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
  KO
K16498  protocadherin delta 1
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03273  Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03273 Virion - Lassa virus and SFTS virus
    129090257 (pcdh20)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:afb01009]
    129090257 (pcdh20)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:afb04515]
    129090257 (pcdh20)
Protein phosphatases and associated proteins [BR:afb01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     129090257 (pcdh20)
Cell adhesion molecules [BR:afb04515]
 Cadherins
  Protocadherins
   129090257 (pcdh20)
SSDB
Motif
Pfam: Cadherin Cadherin_FAT4_N Ig_Cad99C_N Cadherin_2 Ig_CLSTN Cadherin_CELSR2_9th
Other DBs
NCBI-GeneID: 129090257
NCBI-ProteinID: XP_054453810
LinkDB
Position
4:10299041..10302564
AA seq 891 aa
MNYAFSCAGLGCCLCPQHSHTAGGTWVTCVRAMGHGTPDNMNWAGLFQNLLVVVHLQQVI
CGSVRFSIPEEQEPGVLAGSLSKHFPPPYQLLTQEYLWMDKNTGNFYTTEQKMDREALCP
EETKAEECIILHNAVVGPSGDLIQFPVIIEDINDNEPHFENSEIPLRVSEDTTVGTSFLL
DDQAQDRDAGRNGELRYRLEDSDGVFSLKVEEDGPFIMLVVQTALDRETRDMYHMALVTT
DCGSEPLSATAAIIVTVTDVNDNCPNFSADSPRHVTVPGDSPKNMLVAQVRATDRDSGPN
AAIVYSLSPKVSERAKKLFSLDSLTGYIRLTQDLHSDSSEGLLLNVLASGHHCPPADTQV
TVSILPKVNQELTIKIGFIAEHQNQTMVLPENQPPTVLAVLELEGDSSFKGSSLAIEREV
PFTLSPQNGKYLLSTSKPLDYEMKSEHFIYVVVQGISAEGSVIISSRRVIRVLVADVNDN
APHFLQSHYQLEVEENNQPGMSLLRVSASDADSGYNGRVTYRLDKYTSTIFNIVPETGQL
SVSAVLDRELQGVFKLTVFAQDSGSPPLESVATVSIRVLDQNDNAPVFLTPHFIFFIPEN
VPPFAQVGAVGVTDPDEGENGNTELHVVNSSGPFVVDNTQGTLRTTNNLDRETDDRYELY
LLASDHGRPFALTSTARVTIFVEDINDNQPKVILPSSNSSCQTVSPATIAGTIVTKIYAI
DEDSGLNSEITYTVVAPESVQNSSPFRVDSRSGNITVAQHLLQKDLGMHHLFIVVRDGGK
PAPLYTTVWVNLLVNESMGPCNLDRAPTWTGTSNLVQTPSKAPICEVEDTRSAQLTLFVG
LGMMLVSTCLLVATAVLYLKQKRRSVQQNKRGHIEENEIPLRLKDKYYSDD
NT seq 2676 nt   +upstreamnt  +downstreamnt
atgaattatgccttcagctgtgcaggtttaggttgctgcctctgtcctcagcattcacac
actgccgggggaacttgggtgacatgtgtgagggcgatgggccatgggactcctgataat
atgaactgggctggactatttcagaatctgctggttgtggtccatctgcagcaggtcata
tgtggttctgtccgattttctatcccagaggagcaggagcctggtgttctggcagggtca
cttagtaaacactttccacctccgtaccagctcctgacccaggagtatctctggatggac
aaaaacacagggaatttctacaccactgagcaaaagatggatcgtgaggccctctgcccc
gaggagacaaaagctgaggaatgcattattttacacaatgctgtcgttgggccctctggg
gaccttatacagtttcctgtgatcatagaggacatcaatgacaatgaacctcattttgaa
aacagtgaaatacccctgagggtgtctgaggacacgactgtggggaccagtttcttacta
gatgaccaggctcaggacagggatgctggaagaaacggagagctgcgttaccgcctagaa
gattctgatggagttttcagtttaaaagtggaagaagacgggcctttcatcatgctggtt
gtgcaaacagctctggatagggagactcgggacatgtatcacatggcactggtgaccacc
gactgtggctcagaacctttaagtgctacagcggctataatagtcacagtgacagatgtt
aatgacaactgtccaaactttagcgctgacagtccccgccatgtcaccgtcccaggagac
tccccgaagaacatgctggttgctcaggtcagagccacagaccgagattcaggcccgaat
gctgccatcgtctactccctcagtcccaaagtatcagagcgggccaagaagctctttagc
ctcgacagcctcactgggtacatcagactaacacaggacctccacagtgacagctccgag
gggctgctgttgaacgtgttagctagcggccatcactgccccccagcagacactcaggta
accgtatccatcctccccaaggtgaaccaagagctgacgatcaagatcgggttcatagca
gagcatcaaaaccagactatggtgttaccagagaaccagccccccaccgttttagctgtt
ttagagcttgagggtgacagcagctttaaaggctcatcccttgccattgagagggaggtg
cctttcactctgagcccacagaatggcaaatatctgctttccacatcaaagcctttggac
tatgagatgaaaagcgaacattttatttatgtggtagtgcaggggatatcagctgaagga
tctgtgatcatttcttccagacgggtgatcagggtgttggtggcagatgtcaatgataat
gctccacatttcctccagtctcactatcagctggaggtggaggaaaacaaccagccaggg
atgtccctgctgagggtctcagcatcagacgcagacagtggatacaacggtagggtgacc
tacaggctggacaaatacacatctaccatctttaacattgtccccgagacaggtcaactg
tctgtgtcagccgttctggatagggaactgcagggtgtgtttaaactcactgtgtttgca
caagatagcggttcgcctcccttggagtcggtggctacagtatccattcgtgttctggac
cagaatgacaatgcacctgtttttctaacccctcatttcatcttttttatccctgagaat
gtcccaccattcgcccaggtgggggctgttggggtgacagacccagatgaaggagagaat
gggaacacagagttgcatgttgtaaacagcagtggaccttttgttgtggataacacccag
gggacactgcgcactaccaacaacttggaccgcgagacagacgatcgctatgaactctac
ctgctggccagcgatcatgggcgcccgttcgctttgacatccactgccagggtaactatc
tttgtggaggacatcaatgacaaccagccaaaagtgatccttcccagcagcaactcctca
tgccaaactgtctctccagcaaccattgcaggaacaatagtaacaaagatctatgccatc
gacgaggactcggggctgaattctgagattacgtacactgttgtggccccagagtcggtg
caaaacagcagtcccttccgggtggactcaaggtcagggaacatcaccgtagctcagcat
cttctacagaaagacctgggaatgcatcacctgttcattgtggtcagagatggggggaaa
ccagctccgctttataccactgtttgggttaatctgttggtcaatgagagcatggggccc
tgcaatttagacagggcccccacctggacagggacatccaacttggttcaaaccccctca
aaggcccccatctgtgaggtggaggacaccagatctgctcagctgacactgtttgtaggc
ctgggtatgatgctggtatccacatgtttgcttgtggcgacagcagttttatacctgaaa
cagaagagaagaagtgtacaacagaacaagagggggcacattgaggagaatgagattcca
ctcaggctcaaagacaaatattactctgatgattaa

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