Anoplopoma fimbria (sablefish): 129090965
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Entry
129090965 CDS
T09102
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129090965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129090965
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129090965
Spliceosome [BR:
afb03041
]
Complex C
Other components
Step II factors
129090965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
TsaE
PhoH
ABC_tran
Sigma54_activ_2
RSRP
Motif
Other DBs
NCBI-GeneID:
129090965
NCBI-ProteinID:
XP_054454338
LinkDB
All DBs
Position
5:complement(8463192..8473799)
Genome browser
AA seq
1221 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPTFDGFKALLLQN
GAEFTDSLVGNLLRLIQTMRPPSKSCTSKVSEVVVKPKTEKDRMKELFPALCRADDPAPK
KLLDEDDVKVAADAMKELEMFLPSVSGEDPKSSKSSRSEKSRRHSRSRSRSREKDRHRDR
DRDRDRDRDRDKDRKKRHRSRSRSRSRDRDRQRDGDRDRDRGKRRDKSSRWSERSPSPKK
DQDKDSDRWKDKHVDRPPPEEPSVGDIYNGKITSIMQFGCFVQLEGLRKRWEGLVHISEL
RREGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGD
EISMRNPDRPSNLNLGHPPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDF
DDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQ
SALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWK
KHAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQIT
QYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIK
YMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVMKRTDMKLIVTSAT
LDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVF
LTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIAT
NIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKT
YRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAME
QLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFY
RPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIR
KQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSS
ALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLE
PLYNRYEEPNAWRISRAFRRR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtggcgtggacgagctgtcccagcttgagtacttgtctctggtgtccaaa
gtgtgcacggagctggacaaccacctggggataagcgacaaagatttagctgagtttgtc
atcgacctcgcggagaaacagcccacctttgatgggtttaaagctctgctgctgcagaat
ggagccgagttcactgattctctggtgggtaatctgctcaggctcatccagaccatgaga
cctccatccaagtcctgtaccagcaaagtctccgaggttgtggtcaagccgaagacggag
aaggacaggatgaaggagctgtttcctgcgctgtgtagagcagatgatccggctccaaag
aagctactcgacgaagatgatgtgaaggtagcagctgatgccatgaaagagctggagatg
tttctgcccagtgtcagcggggaagaccccaaaagcagcaagagcagcaggtcagagaag
agccgacgccacagccgaagtcgcagcagaagcagagaaaaagacagacacagagatcgg
gacagagatagagacagagacagagatcgggataaggacaggaaaaaacggcatcgctcc
aggtccaggtctcgctccagagatcgggatcggcagagagatggcgacagagacagagat
cgcggcaaaagaagagataaatcttcccgctggtctgagcgctcacccagtcccaagaaa
gaccaagacaaggactctgatcgctggaaggacaaacatgtggaccgcccgccaccggaa
gaaccttctgttggtgacatatacaacggcaaaatcaccagtatcatgcagtttggatgc
tttgttcagctggagggattaaggaaacgatgggagggtttggttcacatttccgagctg
cgtagagagggccgtgtggccaacgtcgctgatgtcgtcagcaaaggacaaagagtcaag
atcaaggtgctctcattcaccggctctaagaccagcctcagtatgaaggatgtggaccag
gagacaggagaagacctgaaccccaacaggaggaggaacgtaggcccggatggaggggat
gagatctccatgaggaaccccgacaggccgagcaacctgaacctgggccacccccccgag
ctggagcaggacgacaccctggagcgcaagaggctcaccaagatttctgacccggagaag
tgggagatcaaacagatgattgctgccaacgtcttgtccaaagaagaattccctgatttt
gatgacgagaccgggatccttcctaaagttgatgatgaagaggatgaagatttggagatt
gagctggttgaagaggaacccccgttcctgaggggacacaccaagcaaagcatggacatg
agccccgtcaagattgtcaagaatccagatggctctctgtctcaagccgccatgatgcag
agcgctctggctaaagagaggcgagagctgaagcaggctgcacgagaggcagagatggac
tccatccccatggggctgaacaaacactgggttgacccgctgccagacgtcgatggacgg
cagattgcagccaacatgagaggcattggcatgatgcccaatgacatcccagagtggaag
aagcatgcttttggaggcaacaaggcctcgtacggaaagaagacccagctctccatcctg
gagcagagggagagcctgcccatctacaagctgaaggagcagctcattcaggctgttcac
gacaaccagatcctgattgtgattggagaaactgggtccggtaagaccacacagatcact
cagtacctggcggaggctggttacaccaccagggggaagatcggctgcacgcagccccgt
cgtgtggccgccatgtccgtggccaagagagtctctgaggagtacggttgctgtctaggt
caagaggtgggttacaccatccgttttgaggactgcaccagcccagagacggtgatcaag
tacatgacggacggtatgctgttgagagaatgtctgatcgactccgaactgggccagtac
gccatcatcatgttggatgaagctcacgagaggacaatccacacagatgttctctttggt
ttgctcaagaagactgtaatgaaacgcacagacatgaagctgattgttacatcagccaca
ctggacgccgtgaagttctctcagtatttctacgaggcgcccatcttcaccatcccagga
agaacttaccccgtggaggttctctacaccaaagagcccgagacagactacctggacgcc
agcctcatcacagtcatgcagattcatctgaccgagcctccaggtgacgtcctggtgttt
ctgactggacaggaggagatcgacaccgcttgtgagatcctgtacgagagaatgaagtca
ctggggccggatgttcctgagctgattattctgccggtttactctgctctgcccagtgag
atgcagaccaggatctttgacccggcaccccccggcagcagaaaggtggtcattgccaca
aacattgcagaaacatctctgaccatcgatgggatctattatgtcgtggatcctggcttt
gtcaagcaaaaagtctacaactcaaagaccggcatcgaccagctggtggtgactcccatc
tcacaggcccaggccaagcagagggcgggtcgagccggcagaacgggcccagggaagact
tacaggctgtacacagagagagcctacagggacgagatgctcacgaccaacgtgcccgag
atccagagaaccaacttggccagcactgtgctgtctctgaaggccatgggcatcaatgac
ctcctgtcctttgacttcatggacgctcctcccatggagactctgatcacagccatggag
cagctctacactctgggagctctggatgatgaaggcttactcacacgtctggggagaagg
atggctgagtttcctctggagcccatgctgtgtaagatgttgatcatgtcggtccatctg
ggctgcagtgaagagatgctcaccatcgtctccatgctgtcagtgcagaacgtcttctac
aggcctaaggacaagcaggccttggctgaccagaagaaggcaaagtttcaccagcctgag
ggagaccacctgaccctgctggccgtctacaactcctggaagaacaacaagttctccaac
ccctggtgttatgagaacttcatccaggctcgctccctgcgcagagctcaggacatccgc
aaacagatgctgggtatcatggacagacataaactggatgtggtgtcttgtggtaaagcg
acagtacgggtccagaaagccatctgcagtggtttcttcaggaatgcggccaaaaaggat
cctcaggagggctaccggaccctgatagaccagcaagtcgtatacatccacccctccagc
gctctgttcaaccgacagcctgagtgggtcgtgtaccacgagttggtgctgaccaccaag
gagtacatgcgggaggtgaccaccatcgacccgcgctggctggtggagttttctccggcc
ttcttcaaagtgtccgacccgacgcgcctcagcaagcagaagaaacaacagcgcctcgag
cctctgtacaatcgctacgaggaacccaacgcttggagaatctctcgcgctttcagacgc
cgttga
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integrated database retrieval system
