Anoplopoma fimbria (sablefish): 129091023
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Entry
129091023 CDS
T09102
Name
(RefSeq) integrin alpha-X-like
KO
K06461
integrin alpha M
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04145
Phagosome
afb04514
Cell adhesion molecule (CAM) interaction
afb04517
IgSF CAM signaling
afb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129091023
04517 IgSF CAM signaling
129091023
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129091023
09142 Cell motility
04810 Regulation of actin cytoskeleton
129091023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129091023
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129091023
04515 Cell adhesion molecules [BR:
afb04515
]
129091023
04090 CD molecules [BR:
afb04090
]
129091023
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129091023
Membrane trafficking [BR:
afb04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
129091023
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129091023
Cell adhesion molecules [BR:
afb04515
]
Integrins
Integrin alpha subunits
129091023
CD molecules [BR:
afb04090
]
Proteins
129091023
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
129091023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
Integrin_A_Ig_2
VWA_2
Integrin_A_Ig_1
FG-GAP_3
FG-GAP_2
Copine
Motif
Other DBs
NCBI-GeneID:
129091023
NCBI-ProteinID:
XP_054454415
LinkDB
All DBs
Position
5:complement(7556040..7569344)
Genome browser
AA seq
1133 aa
AA seq
DB search
MDWRITTTVFLSVLKAALCYNIEPVAWKTLTQPAAGFGYQVVQREVDLLVSAPLEQYSQR
GRGQIYKCSTESCSKLSGPGIQFPINMSLGLTMASDPSRQNTLACGPTIPKDCQSITMYS
GACWQIDRNDKFKGPVPSSDRACPSADIAFLLDGSGSVSNTDFKTMKGFVKNLVRSLLPL
GTKFAIAQFARDPKIHFFFNDFLSGTKPWEAKIDEIKQLGSTTYTAEAIKHVVTNVFIPS
RGSRSNVKKVLIVITDGESHDRRDLPSAAALAEKANIVRFAVGVGDAFKKPAAINELETI
SSSATENVFQVKSFDALEKIRESLQAKLFSIEGSKSGESLKLEMAQEGFSAAYAPEGIQM
AIVGANEWKGGYLQYPVSTSLKTSSYEPNIEADSYLGYSMAVARTRQGTLTIVGAPRYQH
RGVVMVVFQNWKQKKIDPFPWQFQSGEYFGSVVCALDVDLDTYTDLILISAPMFVDTDRE
GRVYVCDVAGLDVECHLDSPSVLRGEASHKGRFGSSLAMVPDLNEDGLSELAVGAPLEDD
GQGSIYIFNGEGRGRISSAYSQRIAGSEVRSGLKFFGTSISQSSFDHSGDKLPDLAVGSK
GAVVLLRSKPIVTVQATVSFSPNQISTQGSDCSKPLKNTATICFTMTKLSPVDRAQAMIN
YTLTLDATRKVPNNRAYIVAKQREKIGTITLDLLRRRCANVEYFVEACPDDSLNALSNEL
RFTFKGLPNNGNPLPSLALQVQTTSFHPLGFEINCGTDDKCVDDLKLNFNFSSSSEVRVG
IDELLDVTVSVENSGENSYNSRVSLTYPADLSYRKFTILQGRIECRSLDSEDGITRGMTD
CTVDKPILKSNTKAFFIISYGIETNSQLGRRIFVSANATSGNQEHSDSSELYKIKGIDVK
YSIFATIESTLSYSNFSSGKNNLHKPVQQSIVVTNDIRALNFTVVIRVPVKLGDKDIWVD
SRNLQIPDCQREMDEVPIVTDFIAKIQKNKLVDCSVARCTVFKCSRFMGRLESKKYNISA
NLSSGWIEQIGLQSAKFLLTSTASLEYDSNQYIFFSTGSNNKPPVHKIEAEVDVYREPDF
TKEIVGGSLGGLAFLALLTAGLYKAGFFKSKYKEMINNDAADPGVDGDAPAPE
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggactggagaattactacaactgtattcttgtcagtgttaaaagctgcactttgttat
aacatcgaacccgtggcttggaagacattgactcaacctgctgcaggttttggataccag
gtggtgcagcgggaagtagacttgctggtcagtgctcctcttgaacagtattcacaaaga
ggaagaggacaaatatataagtgctccaccgaatcatgtagtaaactatcgggtccaggg
atccaatttcccatcaacatgtctcttggtttgacaatggcaagtgatccctccagacaa
aacactttggcgtgtggtccaaccatcccaaaggattgccaaagtatcaccatgtacagc
ggtgcatgctggcagatagaccgtaatgataaatttaagggtcccgtaccttcttctgat
cgagcgtgcccatcagcagacattgcatttctgttggatggctctggcagcgtatcaaat
acggattttaaaacaatgaaaggttttgtgaaaaatctggtccgctcactcctgccacta
ggcacaaagtttgccattgcccaattcgccagggatcccaagatccattttttcttcaat
gattttctctctggaactaaaccatgggaagctaaaattgatgagattaaacaactcggg
tcaacaacttacacagctgaagccatcaaacatgtggtcacaaatgttttcataccaagt
agaggttcccggtcaaatgtgaagaaagtcttgatagtcattaccgatggagaatcacac
gaccggcgtgatttgccatctgcagcagcgttagctgagaaggcaaatattgttcgattt
gctgttggagtgggggacgcatttaagaaaccagctgcaataaatgaactggagaccatt
tcatcttctgccacagaaaacgtatttcaagtgaagagttttgacgcacttgaaaaaata
agggagagtttgcaggccaaactcttttccattgaaggatcaaaaagtggagagtcactg
aaactggaaatggctcaagagggattcagcgcagcttatgcgcctgagggaattcagatg
gctattgttggtgccaatgagtggaaaggaggctacctccaatacccagtgtcgacaagc
ctcaagacgagctcctatgagcctaatatagaggctgacagttatctgggttactccatg
gcagtcgctagaacgaggcaaggcacattaacaattgttggagctccaagatatcaacac
agaggagttgtgatggtagttttccaaaactggaagcaaaaaaagattgatccctttcca
tggcagtttcagagtggtgaatattttgggtcagttgtttgtgcgttggacgtggatctt
gacacttacactgacctaatcctcatatctgcccctatgttcgtggacaccgatagagag
ggacgagtttacgtttgcgacgtagctggtttggatgtggagtgtcacttagattctccg
tcagtactaagaggggaggcatcccacaaaggaaggtttgggtcttctctcgctatggtg
cccgatcttaacgaagatggtctcagtgagttggcagttggagcgcctttggaagatgac
ggtcaaggcagtatctacatattcaatggtgaaggaagaggaagaatcagttccgcttac
tcacagagaattgctggctctgaagtccggtcaggactgaagttcttcggcacgtcgatc
agtcagtcgtcttttgaccatagtggcgacaaattgccggatttagctgtgggttcaaag
ggcgcagttgttttacttaggtcaaagcctatagtaacggtacaagctacagtgtcgttc
agcccaaaccaaatctctactcaaggctcggactgctcaaagcctttgaagaacacagca
acaatctgctttaccatgaccaagctctctccagtagacagagctcaagcaatgattaac
tatactctaacgctggatgccacccgcaaagtcccaaacaaccgggcctacattgttgca
aaacagcgagagaagattggaacaattactcttgacttactgcgtcgaagatgtgccaac
gttgagtactttgtcgaggcctgtccagatgattccctcaatgcactttccaatgaactc
agattcacctttaaaggtttacctaacaacggaaatccccttccgagtctcgccctgcag
gtgcagacaacaagctttcatcctttagggttcgagatcaattgcggcacagatgataaa
tgtgtcgatgacctgaaattaaatttcaacttcagcagttcctcagaggttagagtgggc
attgatgaactcttggatgtcactgtctcagtggagaacagcggggaaaactcttacaac
agccgagtcagtctcacctacccagccgatctctcatacaggaagtttacaattctgcag
ggaagaatcgagtgcaggtccttggacagtgaagatggcattacgagaggaatgacagac
tgcactgttgacaagcctattttgaagagcaacactaaggctttcttcatcatctcctat
gggatcgaaactaacagtcaacttggcaggaggatttttgtctctgctaatgctaccagt
gggaatcaggagcactccgactcgagtgaactctacaaaatcaaagggattgatgtgaag
tacagcatttttgctacgattgaaagtacccttagctacagcaacttctcttccggcaag
aataatctgcacaaaccagtccaacaatcgattgtggttacaaatgatattagagctctg
aatttcactgtggtgatcagggtgccagtgaagctcggtgataaagacatctgggtggat
tcccgcaatttgcagattccagattgccaaagagaaatggatgaagtacctattgtcaca
gattttattgctaagatacagaaaaataagttggtggactgttctgtagccaggtgcaca
gttttcaagtgcagtaggttcatgggaagactggagagtaaaaagtacaacatctctgcc
aaccttagttcgggatggatagagcagattggacttcaatctgccaaattcctcttgacc
agcacagccagtctggagtacgacagtaaccagtacatctttttttcaacggggtctaac
aacaagcctcctgttcacaagattgaggcagaggtagatgtgtatcgtgaaccagacttc
accaaagagattgttggaggatccctgggagggttggctttcctggctttactcaccgct
ggcctgtataaggctggatttttcaagagtaaatacaaggaaatgattaacaatgatgcg
gcagatccgggggttgatggagacgcacccgcaccggaatga
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