Anoplopoma fimbria (sablefish): 129091045
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Entry
129091045 CDS
T09102
Symbol
gspt1
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A
KO
K03267
peptide chain release factor subunit 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129091045 (gspt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129091045 (gspt1)
03012 Translation factors [BR:
afb03012
]
129091045 (gspt1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129091045 (gspt1)
Translation factors [BR:
afb03012
]
Eukaryotic type
Release factors
129091045 (gspt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
129091045
NCBI-ProteinID:
XP_054454450
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All DBs
Position
5:4046695..4057177
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AA seq
588 aa
AA seq
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MDPRDTAPDSWELEEDAEAPVAAAELPSAFAALNVNAKPFVPNINAPVFIPSFLQADTVD
MPASDGAPDPVASMEVAETAVPAPVENGGTEADMTTEEETWEQKEEPGGEGGGGGGQEDL
GSGGACEEGTARNEDEEMMEEEEEEMPMPKVAPAPPDAPKKEHVNVVFIGHVDAGKSTIG
GQIMYLTGMVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK
KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG
VKHLIVLVNKMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKD
PVTECPWYTGMPFIAHLDSLPNFTRSNDGPVRLPIVDKYKDMGTVILGKLESGCISKAQQ
LVMMPNRHTVEVLSLLSDDVETDDACPGENLKLRLKGIEEEEILPGFILCSPDNLCHSGR
TFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVQISALICLVDKKTGEKSKTRPRFVKQDQ
VCIARLRAAGVICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagagacacagccccggattcgtgggagctggaggaggatgccgaggccccg
gttgccgcggcggagctcccgtccgccttcgccgccctcaacgtcaacgccaagccgttc
gtccccaacattaacgccccggtgttcataccgagcttccttcaagccgacacggtggac
atgccggcttcagacggtgcccccgacccagtggccagcatggaggtggcagaaacagcc
gttccagctccagtggagaatggcggcacagaggccgacatgaccacagaggaagagacg
tgggagcagaaggaggagccagggggagaaggaggaggaggaggcggacaggaggacctt
ggatcaggaggagcctgtgaagagggcacggcgaggaatgaggacgaggagatgatggaa
gaagaagaggaggagatgccaatgcccaaggtggcgccggcaccacccgatgcccccaag
aaagaacatgtgaacgtggtcttcatcggtcacgtggatgctggtaaatcaactattgga
gggcagatcatgtacttaactggaatggtggaaaagcgaaccctggaaaaatatgaaaga
gaagcgaaagaaaagaacagggagacatggtacctgtcgtgggcgctggacacaaaccag
gaggagagagacaaagggaagacggtggaggtcgggagagcctactttgagacggagaaa
aaacatttcactatcctggatgcccccggacacaagagctttgtccccaacatgatcggt
ggagcgtcacaagccgacctggcagtcctggtgatttcagcaagaaagggggagtttgag
accggctttgagaagggtggacagacacgggaacatgccatgctggctaaaacagcagga
gtaaagcatctcattgtcctggtcaacaagatggacgaccccactgtcaactggagccta
gaaaggtatgaagagtgtaaggaaaagctggttccatttctaaagaaggtgggcttcaac
cctaagaaggacatccactttatgccttgctccggactcacaggtgccaacctcaaggac
cccgtaaccgagtgcccctggtacacgggtatgccatttattgcccatctggacagtttg
ccaaacttcaccagatccaacgatggaccagtcagactacctattgtagacaagtacaag
gacatgggcacagttattctgggcaagctggagtcaggatgcatcagtaaagcccagcag
ctggtcatgatgccaaacaggcacacagtggaggtactgagcctgctgagcgacgacgtg
gagacagacgatgcatgtcccggggagaatctgaagctgaggctgaagggcatcgaggag
gaggaaatcctccccggttttatcctctgcagccccgacaacctctgccactccggtcgc
accttcgacgcacagatcgtcataattgagcacaaatcaatcatttgtcctggttacaat
gcagtccttcacatccacacctgcattgaagaagtgcaaatttcagccttaatctgtctg
gtggacaagaagacaggggaaaaaagcaaaacacggccacgctttgtgaagcaggaccaa
gtgtgcatcgccaggctccgggcagctggagtcatctgcttagagaccttcaaagacttc
ccccagatgggacgattcacactgcgagacgaaggcaaaaccatcgccatcggcaaagtg
ctgaagctggtgccagaaaaggactaa
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