Anoplopoma fimbria (sablefish): 129091387
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Entry
129091387 CDS
T09102
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03420
Nucleotide excision repair
afb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
129091387 (ercc4)
03460 Fanconi anemia pathway
129091387 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129091387 (ercc4)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129091387 (ercc4)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
129091387 (ercc4)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
129091387 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
129091387
NCBI-ProteinID:
XP_054454960
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All DBs
Position
5:4369278..4376057
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AA seq
897 aa
AA seq
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MAGQLLEFETEMFLSLFECDGLLVVAEGMGIDRILLQFMRVYSEQGSLVLLLNTTTPEQE
YFTEQLRIEGVTHLPRTVTSEVNTNERYNVYTEGGVLYVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATSFSSGFCQVERVMRNLFVKKL
FLWPRFQASVNTALDRHKPEVIELSVSLTPAMRAIQSSILDIMSACLKELKRYNPTLEAE
DLSVENTLGNAFEKTIRHYLDPLWHQLGSKTKALVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRSSQKIFGSNSGWLFLDSSTSMFMNARGRVYRIPESKKKLKVGAEAEKQKPSSALEV
KRELVLEKSPKWEALTEVLQEIERENKSSQHEPGRVLICASDDRTCAQLQQHIKHGSDWM
LNRLYVRTIGKRDSAAAAAMDLESHKRGHDWPKNGAKGKEPAQKKKSTKSKKRPSLTLTQ
MMGKEGMDEAAVMGSSGDEGDPMEEDGGEEEQLKLDLSSDAYYGVLKEPLTVIHPLKGLT
DPHSLTRVLHEVEPSFVVLYDAELSFVRQLEIYRASRPGKTLRVYFLIYGGSTEEQKYLT
ALSKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLEPANATTNTRKAGGQEQPKEP
SRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRL
YTQCLSMTRYYKKPVLLIEFDPAKPFSLMARSDFRHEISSNDISSKLTLLTLHFPRLRIL
WCPSPHATAELFVDLKQGRSEPDAAAAQAVTAESDMVAESADLYNPGPYDFLLKMPGVNV
KNYRALVKNADNLADICKLSQDKLAEILGNASNAKLLYEFLHNVADVPAPAQKAKQM
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcagctactagagtttgagacggagatgttcctgagtctgtttgaatgtgac
gggctgctggtggtcgcggaggggatggggatagaccgcatcctgctgcagttcatgcgg
gtttactcggagcagggcagcctggtcctcctgctcaacacaaccacacctgaacaggag
tatttcacggagcagttgcgaattgagggagtgacccacctgcccaggacagtgaccagc
gaggtcaacaccaacgagcgctataatgtttacaccgagggaggagtgctgtacgtcacc
agcaggatcctggtggtcgacttcctcactgaccgcatccctgctcatctcatatcaggc
atcctggtgtatcgtgctcataaaatcatcgagtcgtgtcaggaggcctttatccttcgt
cttttcagacagaagaataagacaggcttcattaaggccttcactgacaaggccacgtcc
ttttcttcgggcttctgccaggtcgagcgtgttatgaggaacctctttgtcaagaagctc
ttcctttggcccaggtttcaggcatcagtaaacacagcactggacaggcacaagcccgag
gtgattgagctaagtgtgtcattgacgcctgctatgagggccatccagagctccatcctg
gatatcatgagcgcctgtctgaaggagctgaaacgctacaaccccaccctggaggcggag
gatctgtcagtggagaacacgctaggcaacgccttcgaaaagaccatccgtcactacctg
gaccccttgtggcaccagctgggatcaaagaccaaggccctggtccaggacctgaaagtg
ctgagggttctcctgctctacctcacacagtacgactgcgtcaccttcctcaatctgctc
gagtcgctacgctccagccaaaagatctttggatccaattcagggtggttgttcctcgac
tccagtacctccatgtttatgaatgccaggggtcgagtgtaccgcatccctgagagcaag
aagaaactcaaagtgggagcggaggcagagaagcagaagccatcctctgccttagaggtt
aagcgggaactggtgctggagaagagccccaagtgggaggctctgactgaggtcctgcag
gagattgagagggagaacaagagctctcagcatgaaccaggtcgtgtgctgatctgtgcc
agtgatgacaggacctgcgcccagcttcagcagcacatcaagcacggctccgactggatg
ctcaaccgactgtatgtccgcacaattggcaaaagggactctgctgcagccgctgcaatg
gaccttgaatcgcacaaaaggggccacgactggcctaaaaatggagccaagggaaaggag
ccggcacagaagaaaaagtccacaaagagtaaaaaaaggccatccttgaccttgacccag
atgatggggaaagaggggatggatgaagcagcggtgatgggcagcagtggagatgagggt
gacccaatggaggaggatggaggagaggaagaacaactgaagctggatttgtcgtcggat
gcctactatggcgtcctaaaggagccactgactgtcatccacccacttaaaggtctcact
gacccccacagcttgacgcgggtgctacatgaggtggagcccagtttcgtggtgctgtac
gacgctgaactcagtttcgtccgccagctggaaatctacagagctagccggcccggaaag
acactgagggtgtatttcctcatctatggaggctcgacagaagaacagaagtacctcacg
gcgctgtccaaggaaaagaaagccttcgaacacctgatcagggaaaaagctactatggtc
atcccagaggagagagaggggcgagaagacaccaacctggaccttgctagaaatttagag
ccggccaatgccaccaccaacacccgcaaagcaggaggccaggagcagcccaaagagccc
tcacgagtcattgtggacatgcgggagttccgcagtgaattgccctccttgttgcaccgc
cgtgggctggacatcgagccggtcacgttagaagtaggcgactacatcctgaccccggat
acatgtgtggaacgcaagagcgtcagcgatctgattggctcgttgcagagcggtcgcctc
tacacccagtgtctctccatgacccggtactacaagaaaccagtgcttctcattgagttc
gaccctgcaaaacctttttccttaatggcccgatccgatttccgtcatgagatatcgtcg
aatgatatttcttcaaaactcacgttgctcaccttgcatttcccccggctccgtatactc
tggtgcccctcgccacacgccacagctgagctcttcgtggacttgaagcaaggtcgctct
gaacccgatgctgcagcagctcaggcagtcacagccgagtcagacatggtggccgaatcg
gcagacctctacaaccccggaccttatgacttcctgttgaaaatgcctggggtcaatgta
aaaaactatagggctctcgtaaaaaatgcagacaacctggcagatatatgcaaactcagc
caggacaaactagcagaaatactagggaatgctagcaacgctaagttgctgtatgagttt
ctgcataatgtcgctgatgtccctgctcctgcgcagaaggccaaacagatgtga
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