Anoplopoma fimbria (sablefish): 129091534
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Entry
129091534 CDS
T09102
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like isoform X1
KO
K16360
netrin-G3 ligand
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecule (CAM) interaction
afb04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129091534
04517 IgSF CAM signaling
129091534
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129091534
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
NGL family
129091534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_9
LRR_14
V-set
Ig_2
LRRNT
Ig_6
DUF7617
LRR_NXF1-5
Pam3_Gp34
Motif
Other DBs
NCBI-GeneID:
129091534
NCBI-ProteinID:
XP_054455172
LinkDB
All DBs
Position
5:7155305..7159063
Genome browser
AA seq
745 aa
AA seq
DB search
MRVVMVTSPCTPSPLLWLVQLLLWFHNHGPQLTEAAPPCPNPCTCSNQASRVICTRKSLD
QVPDSISENTRYLNLQENTIQVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTVVPSQAFEYLSKLRELWLRNNPIETLPAFAFHRVPSLRRLDLGELRKLDFI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGIVRPGSFQGLVSLRKL
WLMHSRVSVIERNAFDDLKILEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPGIKGKYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWFTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSASDPSNSYSYFTTVTVETVETVRGEEENSARQYINETFIDFSNP
TVHRGVLEGRPGITISPSLTSLSSLSPRATRATENAVTVSIMDVTNIPGLDDVMKTTKII
IGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIVNVEDEIGAGAGSGISGGSTM
NSVSGEGTLRRHHPEIVNLPNIGRTDTLNHYYKTHHFNNNVMGLSIGSDGMGPGMILNSK
NQQMQDIPISCTSIPISTSNLLSSSGNGTNMNPCSMSPPMPMSLPMPTMGLHGSIKGFMG
QNQNPQMEPLLFKGNSKENVQETQI
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtcatggtgaccagcccctgtaccccttcccccctcctctggttggtccaa
cttttgttgtggtttcacaaccatggaccacagctgacagaggcagcacccccatgcccc
aacccctgtacctgctccaatcaggcgagccgtgtcatctgtacaaggaaaagtttagat
caagtcccggacagtatttcagagaacacaagatacctcaatctacaagaaaacacaatc
caggtgatcaagtctgacacattcaaacacctgcggcatttggaaatcctccagctctcc
aagaaccacatccgccaaattgaggtgggagctttcaatggcctccccaacctcaacacg
ctggagctttttgacaaccgtctcacagtggtaccgtcacaagcctttgagtacctcagc
aagctaagggaactatggctacgaaacaaccctatcgagacactgccggcctttgccttt
caccgtgttccctctttacgccgtctggatctaggggaactcaggaagctggatttcatc
tctgaggctgccttcgaaggtctggtcaacttgcgcttcttgaatcttggcatgtgcggc
ttgaaggacatccctaacctcaccccactagtacgactagaagagttggagctgtcaggg
aaccagctggggatagtcaggcccggatccttccagggcctagtgtcacttcgcaagttg
tggctaatgcactccagagtgtcagtcattgaacgcaatgcttttgatgacctcaaaatc
ttggaggagctcaacctctcccacaactccctgcattctctgccccatgacctcttcacc
cctctgcaccaattggagagggtacatctcaaccacaacccctgggtgtgcaactgtgac
gttctgtggctcagctggtggctgaaagaaacagttcccagcaacaccacgtgttgtgct
cgatgccatgcgcccccaggtataaaaggcaaatacattggggaactagaccagagccac
tttacctgctatgccccagtgattgttgagccgcccactgacctcaatgtcactgagggt
atggctgctgagctgaaatgtcgtactggaacctcgatgacctctgtgaattggttcact
ccgaatggcactctgatgacccacggatcataccgagtcaggatctcagtgcttcatgac
ggaacactgaacttcacaaatgtgaccgtgcaagacacagggcagtacacttgcatggtt
accaactctgcgggaaacaccactgcgaccgccgtgctcaatgtatctgcttcagacccc
agcaacagctatagctatttcaccactgtcactgtggaaacagtggagacagtgagagga
gaggaggaaaactcagcaagacagtacattaacgagaccttcatagatttttctaatccc
actgttcacagaggagtgttggaaggccgacctggcatcactatatcgccttctctcacc
tctctttcctcactgtccccacgagccaccagagccactgaaaatgctgtgactgtgtcc
ataatggatgtaactaacattccagggctggatgatgtaatgaaaacaactaagatcatc
ataggttgctttgtggccattacctttatggcagctgtaatgttggttgtattctacaaa
ctgcgtaagcagcaccagctacacaagcaccatggccctgccagagccatcgagattgtc
aacgtagaagatgagatcggagctggggccgggagtggcatctcaggcggttcaacaatg
aattctgtcagtggagaaggaaccctaaggagacatcatccagaaatagtcaacctcccc
aacattggccgtacggatactctcaaccattactacaagacccatcatttcaacaacaac
gtgatgggtcttagtatcggctccgacgggatgggaccaggaatgatcctcaatagcaag
aaccagcaaatgcaggatatccccatctcctgtacctcaatcccaatctctacgtccaat
ttgctctcctcatccggcaatggcaccaacatgaacccctgttctatgtccccacccatg
ccgatgtctctccccatgcctaccatgggcttacacggatcaatcaagggtttcatgggc
caaaaccagaatccccaaatggagcctcttctcttcaaggggaactcgaaggaaaacgtc
caagagactcagatctaa
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