Anoplopoma fimbria (sablefish): 129091898
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Entry
129091898 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: neurexin-1a-like
KO
K07377
neurexin
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129091898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129091898
Membrane trafficking [BR:
afb04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
129091898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_G_3
ConA_2nd_BAM2
EGF
Syndecan
Motif
Other DBs
NCBI-GeneID:
129091898
NCBI-ProteinID:
XP_054455556
LinkDB
All DBs
Position
6:16200602..16438485
Genome browser
AA seq
1542 aa
AA seq
DB search
MPVYSLTVNQIYFLLKQRFRXINSALKVSVHLHRFFDNTMVLQKPHGAHIIWVGLLFCCF
VEIGTCLELTGAEGQWARFPVWNACCESEMSFNMKTKSSHGLLVYFDDEGFCDFLELLIL
NGKLSLRFSIFCAEPATVVSDTAVNDSQWHAVTIRRNFKNTTLTVDNETKWVEVKSKRRD
MTVFSHLFVGGIPPELRSVALRLTSAAVKDQLPFTGWITDIKVNNTESVMINSEGVLKDL
CGSANNCLNGGVCSIINNEPTCNCSQTRFQGKDCSEEDNYTEGLAHLMMGDQGKSKGQRG
EVWLLRSLLSIQGKEEYVATFKGSEFFCYDLSLNPIQSSSDEITLSFKTLQRNGLMLHTG
KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNDWHDVKVTRNLRQHSGIGHA
MVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKN
NDVRLELSRMAKQGDPKMKVHGTVAFKCENVATLDPITFETPESFIILNKWNAKKTGSIS
FDFRTTEPNGLLLFSHGKPKQQPKDSKNPQTLKVDFFAIEMLDGHLYLLLDMGSGTTKTK
AVNKKVNDGEWYHVDFQRDGRSGTISINTLRTAYTAPGESEILDLDDNLYLGGLPENKMG
LVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRRLAEVQKAAGVKPSCSKEPPKQCLSNP
CQNNGVCREGWNRYVCDCSGTGYLGRSCEREATILSYDGSKFMKVQLPVVMHTEAEDVSL
RFRSQRAYGILIATTSRDSADTLRLELESGRVRLTVNLDCIRINCTSSKGPETIFAGQNL
NDNEWHTVRVFRRGKSLKLTVDDLQSVEGQMAGHHTQLEFHNIETGIVTEKRFMSMVPSN
FIGHLQSLAFNGMAYIDLCQNGDIDYCELKAMIGFKNIIADPVTFKSRSSYVTLTTLQAY
YSMHLFFQFKTTSSDGLILFNSGDGNDFIVVELVKGYLHYVSDLGNGAHLIKGNSNKPLN
DNHWHNVIISRDTNNLHTVKIDTKITTQTTTGAKNLDLKGNLYIGGVAKEMFKELPKLVH
AKEGFQGCLASVDLNGRLPDLMSDALDCVGQIERGCEGPSTTCQEDSCANQGACLQQWEG
FSCDCSMTTFGGPLCNDAGTTYIFGRDGGLITYTWPPNDRPSTRADRLAIGFSTHLKDAV
LVRVDSSSGLGDFLKLHIEKGNIAVVFNVGTDDINIEETSKFVNDGKYHIVKFTRSGGNA
TLQVDDLPVIERYPTGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQTTIQI
GGWERDRSRSFQGQLSGLYYNGLKVFNMAAEGDSNIKIQGSVRLVGDSPSSITPQSSTTA
NRSETSTSIMEITTTTASSRRVKQTTPREPQQATDDLLVASAECPSDDEDIDPCEPSSGG
LANPTGVGPKGYPDTSEVFRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHV
DESRNYISNSAQSNGTIVKEKPVNTAKTSSKSKKNKDKEYYV
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgccagtctactctctcacagtcaaccaaatttatttcttgcttaagcaaagattcaga
taaataaattcagccctaaaagtctctgtccacctgcatagattttttgataacacaatg
gttttacaaaagccacatggggcccatatcatatgggttggactgcttttttgttgcttt
gtagagattggcacctgtctagagttaacaggtgctgagggtcagtgggctagatttcca
gtgtggaatgcatgttgcgaaagtgaaatgagcttcaatatgaaaacaaagagttcccac
gggctgctagtttacttcgacgatgagggattctgtgactttctagaacttctcatactt
aatggtaaactcagcctccgtttctcgatattctgtgccgagccagcgaccgttgtgtct
gacacggcggtcaacgacagccaatggcacgcagtcacaataaggagaaactttaagaac
acaaccctaacggtggacaatgagacgaaatgggtggaggtgaagtcaaaaagacgggat
atgactgttttcagccatttgtttgttggtggaataccaccggaattacgatccgtggcg
ttacgacttacatcagctgcagtgaaggatcagttaccttttactggatggataactgac
ataaaggtcaacaacacggagtctgtcatgatcaacagtgaaggagtcttaaaggacctc
tgcggttcagccaacaactgcttaaatggaggagtctgcagtataattaacaatgaacca
acatgtaactgctctcagacgaggttccaaggaaaggactgcagtgaagaagacaactat
actgaaggtctggcacacctgatgatgggcgaccaaggtaaaagtaaagggcagagaggg
gaagtttggctactaaggtcccttctgagcattcaaggaaaggaagagtatgtcgccacc
ttcaaaggatcggagttcttctgctacgacttgtccttgaacccgattcaaagcagcagt
gatgaaatcacgttgtcattcaaaaccctgcaaaggaatggactgatgctgcacacgggc
aaatcagctgattacgtcaacctggcactgaaaaatggggctgtctcactcgtcattaat
ttggggtctggagcctttgaagctcttgtggagccggtcaatgggaaatttaatgacaat
gattggcatgatgtcaaagtaacaaggaatctacgtcagcactcaggcattggacacgct
atggtaacaatatccgtggatgggattctgaccaccacaggatatacacaagaagactac
accatgctaggctctgatgactttttctatgttggagggagtcctagcacagctgacctg
cctggatctccagttagcaacaacttcatgggctgcctcaaggaggttgtgtacaaaaac
aacgacgtgagacttgagctatccaggatggccaagcagggtgatcccaagatgaaggtc
catggtactgtcgccttcaagtgcgagaatgtggccactctggaccccatcacattcgag
acgccagagtcttttatcatcctcaacaagtggaacgctaagaagaccggctccatctcc
tttgacttccgcacaaccgagcccaacggccttctgctcttcagtcatggcaagcctaag
cagcagccaaaagattccaagaatcctcagactctcaaggtggacttttttgccattgag
atgctggatggccatctgtacctgctgctggacatgggctcaggaaccacaaagacgaag
gcagtcaataagaaagtaaatgatggcgagtggtaccatgtggatttccagcgggatggc
agatcaggtaccatctctatcaacaccctccgcactgcctacacagcccctggagaaagt
gagatcttggacttggatgacaatctctacctcgggggtctgccagagaacaaaatgggg
ctggtgttccccactgaggtgtggacagcgctactcaactacggctacgtgggctgcatc
cgggatctattcatcgacggacagagtaaggatatccggcgcctggctgaggtccagaag
gccgccggggtgaagccctcctgctctaaggagcctcccaaacagtgtttgagcaacccc
tgccaaaacaacggtgtctgtagagagggctggaaccgctacgtatgtgactgctctggg
actggatacctggggcgctcctgtgaaagagaggcaactatcctcagctatgacggcagt
aagtttatgaaggtccagctgccagtggtgatgcacacagaagccgaggatgtgtctctg
cgcttccgctcccagcgagcctatggcatcctaatagccaccacatcgagggactcggct
gacaccctgcgtctcgagctggaaagcggccgcgtccgcctgactgtcaatttagattgt
atcaggattaactgtacctccagcaaaggtccagagactatttttgcgggtcagaatctg
aacgataatgagtggcacacagtacgtgtgttcaggaggggcaagagtttgaaactgacc
gtagatgatctgcagtctgtggaaggtcaaatggcaggtcaccacacccagctggagttc
cataacattgagacaggcattgtgacggagaagcgcttcatgtccatggtgccgtccaac
ttcatcggccacctccagagccttgccttcaacggcatggcctacatagacctctgtcaa
aatggtgacattgattactgtgagctcaaggccatgatcggcttcaagaacatcattgct
gaccccgtcaccttcaagtcgcgttccagctacgtcaccctcactactctgcaggcctac
tactccatgcaccttttctttcagtttaaaactacctcctccgacggcctcatcctgttc
aacagcggcgatgggaatgacttcatagtggtggagctggtcaaaggttacctgcactat
gtgtctgacctgggaaatggagctcacttgatcaaaggcaactccaacaagcccctgaac
gacaaccattggcacaatgtcataatctccagggacaccaacaacctccacactgtcaag
attgatacaaagatcaccacgcagacgaccacgggagccaagaacctggacctgaagggt
aacctttatattggtggggtggctaaggagatgttcaaggagcttcccaaactggtgcat
gccaaggagggttttcaaggttgtctggcgtcggtggatctgaacggccggctcccagac
ttgatgtcagatgctctggactgcgtgggacagatagagagaggatgtgaaggccctagc
acgacgtgccaagaggactcgtgtgccaaccagggcgcgtgtcttcagcagtgggagggc
ttcagctgtgactgcagcatgacgacatttggaggaccgctctgcaatgatgcgggaacg
acgtacatatttgggcgagacggtggactgatcacatacacgtggccgccaaatgaccgt
cccagcacgagggcagaccggctagccattggcttcagcacgcacctgaaggatgctgtc
ctcgtgagggtggatagctcctctggtctcggagacttcctgaagctgcacatcgaaaaa
ggaaacattgccgttgtatttaatgtcggaacagatgacattaatattgaggagacgtca
aagtttgtaaatgacggaaagtaccatatagtgaagtttacgaggagtgggggtaatgcc
actctgcaggtggatgacctgccagtcattgagcgctaccccacaggcaacaatgataac
gaacgcctggcgattgctagacagcgaatcccataccgacttggtcgagtagttgacgaa
tggctactcgacaaagggcggcagcttacaatcttcaacagccagaccactattcagatt
gggggctgggagagagacagaagtcgatcctttcagggccagctttcggggctctactat
aatggcttgaaggtgttcaacatggccgcagagggagattccaacattaagatccagggc
agcgtgcggcttgttggggattcaccctcctctatcacaccgcagtcgagcaccacagcc
aatcgctcagagacgtccacgtccataatggagataaccaccaccacagcgtccagcagg
cgagtcaaacagactacaccacgagagcctcagcaggcaaccgacgacttgctggtggca
tcagccgagtgtccgagcgatgatgaagacattgatccctgtgagccgagctcaggtggg
ttagccaatcccaccggtgttggaccgaagggttacccagacacatcggaggtcttccgg
gagtccagcagcacgacagggatggtggttggcatcgtggcagcagcagcgctgtgtatt
ctcatcctgctttacgctatgtacaaataccggaacagagacgaaggttcgtaccacgtg
gacgagagtcgcaactacatcagcaactctgcgcagtccaatggcaccatcgtcaaagag
aaaccggtgaacaccgcaaaaacctcaagcaagagtaagaagaacaaggacaaggagtac
tacgtgtga
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integrated database retrieval system
