Anoplopoma fimbria (sablefish): 129092052
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Entry
129092052 CDS
T09102
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129092052 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129092052 (vps8)
Membrane trafficking [BR:
afb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
129092052 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_UBOX
zf-RING_Vps41
zf-RING_11
TPR_VPS8_2
zf-RING_5
zf-RING_2
zf_RING_Vps8_fungal
zf-C3HC4
PHD_4
Beta-prop_EML_2
zf-C3HC4_2
zf-rbx1
WDR55
Beta-prop_HPS5
zf-C3H2C3
PHD
EIF3I
Motif
Other DBs
NCBI-GeneID:
129092052
NCBI-ProteinID:
XP_054455796
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All DBs
Position
6:25237812..25288948
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AA seq
1408 aa
AA seq
DB search
MSESPDARSLLSASSQLNLMDMDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLNTDNMDAHSCDTSSLASSDSGDPAHLKRKRRTVDLNATVHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFDTNQALRLCLGTKATGAEFGAVSALSIN
HDCSRLLCGFAKGQITMWDLASGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLLAPPDFRDHPITHYSLLAMASLTKILV
IGLKPSLKVWMTFPYSKSDPSSVPQLAWQFVPVQKTVNPILAFCKGDTVHFLLVKKEETG
TIHVIKQKQLHLSCDIISLSWINSRTLVLVDSHEKLQVVDRPSQEILETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMALRNWRERIDCLL
KQEYFVEALSLAWSFHEGTAKAVVGLFGDPMKRKGVVGDKMVEIFFQFAEHALKKCPEQG
KIQVMEQHFHDVVPVLVNYCLLLKRTDLMFNQLYAQLVENMVAKGVFLESLESYIVADRL
GHLTTPIMRDLLAHYHGNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVFNS
GMNDYITPMEKLFAVIGPPLRAGRSLKDEEVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
VQVKNQVFEFLIRLHSADLLEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEY
QQRTVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEGRLLALAEKAKFYQICEFLYEKKHLYDRIIDCYLR
DSLRKGEIFSYIHNLLSMPGYSPEEKQTVRDKVLQHIQELVTLDPSKSADLVVFHFAKEV
QQIICELQDDQLLFQFLSCLLEPRESHHSGPILPLECDLHEMLLDLLCRFGPQQLLSFLQ
TSQHYRLQEAIQITQKYHHNEATAYLLEKKGDVHGAFTVLLETLKEKLSLLTAESDGGAN
GGDGRRDEEKRDSESSLTGVKDSLKDIISLCHRNSDSLYQQQREVLWFPLLETMMASQKL
VKGLDDERTFEALKELTMKVLNCMSSFISLPAIIQRILQDPVYGKGKLAEIQGLILGMLD
TFNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDYCNICLQQYKRRQDSADEII
VFSCGHLYHYQCLQQKDSGWGLTSELQQRWSCYKCSSSQGGNKRGRSTSLAQVCVCACKR
RLTRVTSVHHDGGAEAHRKKVFVDATLDLQQEQSWNQLRCLYRGPSRLSILSELSHCHSS
DKTGLLIPAQPGTDHFQLKLSPPPLFEE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggatgctcgcagccttctctctgcctcctcgcagctcaacctgatg
gacatggatgcgattgatgataaggagtttgacattccccaagtagacacacctcccaca
ctggagagcatccttaatgagctggaggatgaggaggaaccatttgtgttggaggatacc
tgtgttcttaacacagacaacatggatgctcactcctgtgacacctcctctctggccagc
tctgacagtggagacccagcacacctaaaacggaagaggaggacagtggatcttaatgca
accgttcatgggtctgttcttcgacacagcctgttgaagggcatctctgcacagatcgtc
tctgctgctgacaaagtggatgctggactgccaactgctataacagtgtcgggtgtgatt
gcagtaggaacatctcatggtctggctctggtctttgataccaatcaggctctgcggctc
tgtctgggtaccaaggcaactggggcagagtttggagctgtttcggccctcagcatcaac
cacgattgctcgcgacttctctgcgggttcgccaaaggacagatcacaatgtgggatcta
gccagtgggaagctcctgagaacaatcactgatgcccaccctccagggacagctatactg
catgtgaagttcacagatgacccaactcttgcagtgtgcaatgacagtggaggatcggtt
ttcgagctggctttcaggagggtgatgggtatgcggtcctgtgactctcgatgtctcttc
agtggttctaaaggggaggtctgctgtattgaaccactgcttgctcctccagacttcaga
gaccatcccatcacacactactctctgctggctatggcctctctcactaagattctggtc
attggactaaagccctcgctgaaagtctggatgacttttccctacagcaagtctgatccg
tccagtgtccctcagctggcctggcagtttgttcctgttcagaagaccgtcaatccgatc
ctggctttttgtaaaggagacacagtccacttcctcctggtaaagaaggaggaaacgggg
accatccatgtcattaaacagaaacaactccacttaagctgtgacatcattagcctgagt
tggattaacagtcgtacgctggttctggtagacagccatgaaaaactgcaggtcgtggac
cggcccagtcaggagattttggagactctagacttggagcaggtgcaactggtctataac
agccgacatttcaaatcgctggcgactggagggaatgtctcccaggctctggctttggtc
ggagaaaaggcctgctaccagtcagtctcgagctacgcaggacagattgtctatttgggt
accaagtcagctcacattatggctctaaggaattggagagagcgtatagactgcctgctg
aagcaggagtattttgttgaggctctctctctggcctggtccttccacgagggaactgct
aaagctgtggtcggcctgtttggagatccaatgaaaaggaagggagttgtaggtgacaag
atggtagagatctttttccagtttgcagagcatgctttgaagaagtgtccagaacaaggc
aagatccaagtgatggagcagcatttccacgatgtggttccagtcctggtgaattactgc
ctgctgctaaagaggactgacctgatgttcaaccagttgtatgctcagttggtggagaac
atggttgctaagggcgtctttctggagtcactagagtcgtacattgttgcggaccgtctt
ggtcacctcaccacgcccatcatgagggacctcctggcccattaccatggcaatggtatg
atggacagcctggagagatgcattgtccatctggatgtgacaagccttgacatacagcag
gtggttcaagtgtgttgggagaaccaactctatgatgcaatgatttacgttttcaacagc
ggcatgaatgactacattacacctatggagaaactctttgcagtgattggcccaccactt
agagcggggaggagcctaaaggatgaggaagtggtgatgggaaacaaacttctggtgtac
ataagttgctgtcttgcaggaagggcatatccacttggagacatccctgaagatcttgtg
gttcaagtcaagaaccaggtgtttgagttccttatccgtctccattcagccgacttgttg
gaggaggaggaggttttcccgtttattcgtacactcctccactttgatacccgggagttc
ctcaatgtcctggctatgacatttgaagactttaagaatgataagcaggcccttgagtac
cagcagaggacagtggacatcttacttcaggtgatggtggacaacccagactttactcca
tcccaggttggcgggctcttcacatttttggctcgccagttggccaagccagacaacaca
ctttttgtgaacaggaaactctttgatcaggttctggagttcctgtgttgcccagacgat
gactccagacacactgagaggcagcaggttctgctggagctgctgcaggttgggggtgtg
gtccagtttaatgaaggaaggctgttggctctggcagagaaggccaagttctaccaaatc
tgtgaatttctctatgagaagaaacatttgtatgacagaattattgactgctacctgaga
gactccctcagaaagggggagatcttcagctacatccacaacctgctgtccatgcccggc
tacagccctgaggagaaacaaacagtcagggacaaagtacttcaacacattcaggagctg
gtgacacttgatcccagcaagtcggctgacctagtggtgtttcactttgctaaagaggtg
caacaaatcatctgtgagcttcaggatgaccagcttcttttccagttcctcagctgcctc
ctggagccacgtgaaagccatcattcagggcccatcctgcctctggaatgtgacctccac
gagatgctcctggacttactgtgccgctttggcccccagcagctcctgagcttccttcag
acctcccagcactacagactgcaggaggccatacaaattacacagaagtaccaccacaat
gaggctacagcctatctgctggagaagaagggagatgttcatggagcttttactgtcttg
ttagagacattgaaggaaaaactaagtctcctcactgctgagagtgacggaggagctaac
ggaggagatggaagacgggatgaagagaagagagatagtgaatcatcattgacaggagta
aaagattcactgaaagacatcatttccctgtgtcatcgaaattctgacagcctctaccag
caacaaagagaggttctgtggtttccactcctggagaccatgatggcctctcaaaaacta
gttaaggggctcgatgatgaacgcacatttgaggcgcttaaggagctgacaatgaaggtt
ctcaactgtatgagcagctttatttctctgcccgccatcatccaacgaatactgcaggac
cccgtctatgggaaaggaaagttggcagagatccaaggcctcattctgggcatgctggac
acttttaactatgaacagactttacttgaaacaaccaccagtcttttgaaccatgacctc
cactggtcccttgctcacctgcgcgctgctgtcacaaggggactccacccacgacaagac
tactgcaacatctgcctccagcagtacaagcggaggcaggactcagctgatgagatcata
gtgttcagctgtggccacttgtaccactaccagtgcctgcagcagaaggactctgggtgg
ggtcttacttcagagctgcaacagcgatggagctgctacaagtgttcctccagccaagga
ggaaataaaagaggccgcagcacgtccctggcacaggtgtgtgtttgtgcttgcaagaga
agattgactcgtgtaacatcagtgcatcatgatggaggagcagaggctcacaggaagaag
gtgtttgttgacgcaacgttggaccttcagcaggagcagtcctggaatcagctacgttgt
ttgtatcgaggaccatccaggttatccatcctgtcagaactctcccattgccatagcagt
gacaagaccgggcttctaatcccagcccaacccggaacagatcatttccaacttaaactc
tctcctccacctttatttgaagagtag
DBGET
integrated database retrieval system
