Anoplopoma fimbria (sablefish): 129092063
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Entry
129092063 CDS
T09102
Symbol
zswim8
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129092063 (zswim8)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
129092063 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
129092063
NCBI-ProteinID:
XP_054455812
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All DBs
Position
6:complement(26636461..26670991)
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AA seq
1957 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVTSQSGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPCRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLDGITYCSADKKSATFCWSRAVQHQRGVKAAAGAGGEPPEPGRGRGEGGAGGDYKGRGH
SSQQEVAVRPKETILTKRKGLSVSGGGGMLVRLGGGVSLSLEDGGGKCMYKGPGSSSGGK
LKLTQGGGKGASVGGPGGSGGTGGGKHAGAKRRTSSEDSSLEPDLAELSLDDGCSLALGX
EASNTFEFLPPPPEMLPSPSPLLRDSRKYSNSNGGGKMFEAKRVSHASTALPAAEPAPPH
TVLVVMDMPSAAEKEAEPEVTPAQNKDEDVDSAGSNQPSTSTTTVKSGTTQPSVKPLRAR
REASSGGAVAGSGAAAAGGLVNQGAEAASGAAGGEAVGEDDYQAYYLSAASEEGADRQLA
ENHQEEEPDIFAGMNPLEQEEHMEVLFACAEALHAHGYSNEACRLAVELARDLLANPPDL
KVEQPQTKGKKSKVSTSRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLELQRP
PASTKALEVKLAYQESEVVSLLKKIPLGLVEMSAIRERGEQLRDGNFCDYRPVLPLMLAS
FIFDVLCTPVVSPTGXRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGT
RRVKGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGSQRSPSK
HTAAGHGGAAGGVSKHAPASSSATAIATSSSGSPSAAAVAGEEAAHQADLNTVQNNSTAG
ESTAETREHVSDGPPLSSDQQNETAPFKLEATVPSRLALGARCGYNQRCWGSPVRQKKKH
TGMASIDSSAPETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSLGSSSSSGS
RRAGGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSI
FTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGS
AALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRA
LVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSVGGGSGQQRETSG
RCGANGGSGRRPPETSCVVLDAGANMDSVGVATVTASVTTAAVVPVISVGSTIYQSHAMP
GQAMAHPHSQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVAGAAYPQGMHPAFI
GAQYPFAMATVPQPPMTATAVTFPGVPVPSMTQIAVHPYHAETGLPLSTTVAVGSVHSGP
TIQAIQGTAMPSLSSQPGSLVSTPFPAEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGR
RAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEAL
QRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSARGAFCL
TPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggatggggagaggttctccttcgaagactcggac
cggttcgaggaagactccctgtgctccttcatctcagaggccgagagcctctgtcagaac
tggaggggatggaggaagcagtccgctggacccaactccccgactgtcaagattaaagac
ggtcaggtgattccactggtggagttgtcagcgaagcaggtagcgttccacatcccgttt
gaggtggtggaaaaggtctacccacctgtcccagaacagctccagctccgcatcgcctac
tggagcttccccgagaacgaggaggacatcaggttatattcctgcctggctaacgggagt
ccggatgaattccaacgtggagagcagctgtacaggatcagagctgtcaaagaccccctg
cagatcggtttccatctcagtgctaccgtggtgaccagtcagtccggtcagtccaaaggg
gcctacaatgtggcggtcatgtttgatcgctgccgcatcacttcctgcagctgcacctgt
ggcgccggggctaaatggtgcgcccacgtggtggctctctgcctcttcaggatccacaat
gcatcagcagtgtgtctgagggctccggtctctgagtctttgtccaggctgcagagggac
cagctccagaagttcgcccagtacctcatcagtgagctgcctcagcagatccttcccaca
gctcagcggctgctggacgagctgctgtcctctcagtctactgccatcaacactgtgtgt
ggagctccagatcccacagcaggcccttcagcttcagaccagagcacttggtatttggac
gagtcgaccctcagcgacaacatcaaaaagactctgcacaagttctgtgggccctcacct
gtcgtcttcagtgatgtgaactccatgtacctgtcatccacggagccgccagccgccgct
gaatgggcgtgtctgctgcggcccctgaggggccgagagccggagggcatctggaacctc
ctgtctatcgtcagggagatgttcaagagacgagacagcaacgccgccccgctgctggag
attctcactgaacagtgcctcacctatgaacagatcatcagctggtggtacagcgttcgg
acctcagcgtcccacagcagcgccagtggccacacgggacgcagcaacggccagtcggag
gtggcggctcacgcctgtgccagcatgtgtgatgagatggtggtgctgtggaggctggcg
gtgctcgaccccactatgagcccctgcaggcgtctggaactagcaggccagctgaagcag
tggcacctgaaagttatagagatagtgaagcggggacaacatcgcaagtccctggataaa
ctgttccagggcttcaagcccgctgtggagtcctgctatttcaactgggaggtggcctac
ccactggacggcatcacctactgcagcgctgataagaagagcgccacattctgctggtcc
agggcagtgcagcaccagaggggggtcaaagctgctgcaggggcaggcggggagcctcct
gaaccggggagggggagaggtgaaggcggagctggaggagattataaaggaagaggtcac
tcgtcccaacaggaggtggcagtgcgacccaaggagaccatactgaccaagaggaaaggt
ctgtcagtgagcggagggggagggatgctggtccgtctgggagggggcgtctcactgtcc
ctggaagacggaggagggaagtgcatgtacaaagggccgggctcctcctcgggcgggaag
ctgaaactgacacagggaggcgggaagggggcatctgtaggtggtccaggaggaagtgga
gggacaggaggtggtaagcatgctggtgccaagcggagaaccagcagtgaagacagctcc
ctggagccggatctggccgagctcagcctggacgatggttgcagtctggctctcgggncg
gaggccagcaacacctttgagtttctccccccgccacccgagatgctgccctccccgagc
ccgctgctccgagactcccgtaagtacagcaacagcaacggggggggcaaaatgtttgag
gcgaagcgtgtcagccatgcctcaactgcacttcctgctgcagagcctgctccaccacac
acagtgctggttgttatggacatgcccagcgctgcagagaaggaagcggagccggaggtg
acgcctgcccagaacaaagatgaagatgtagactcggctggcagtaaccaaccttccacc
tcaaccaccacggtaaaatcaggcaccactcaaccgtctgtcaagccactgagggcccgc
agagaggcgtcctctggtggagcagtagcagggagcggggcagcagctgcaggaggactg
gtcaaccaaggagcggaggcagcgagtggagctgcaggaggagaagctgtgggtgaggac
gactatcaagcgtactacctgagtgctgcctcagaggagggagcagatagacagctggct
gaaaaccaccaggaggaggagccagacatctttgcagggatgaatcctctggagcaggag
gagcacatggaggtgctgtttgcgtgtgccgaggccctccatgctcatggttacagtaat
gaggcgtgccggctggccgtggagctggccagagacctgttagccaaccctccagacctg
aaagtggagcagccacagactaaaggtaagaagagcaaggtgtcaaccagccgtcagacg
caggtggccactaacacgctgtcaaaggccgccttcctcctcactgttctcagtgaacga
ctggagctccacaacctggccttcagcaccggcatgttctccctggaactccagagacca
ccggcatctaccaaagctctggaggtgaagctggcctaccaggagtcggaggtggtgtct
ctgctgaagaagattcctctgggcctggtggagatgtcggccatcagagagagaggagag
cagctccgagacggaaacttctgtgattacagacctgtgctgcctctcatgttggccagc
ttcatcttcgatgtgctgtgcaccccagttgtgtccccaacgggtntccgtccgccaagc
cgcaaccgtaacaacgagatgcccggtgatgaggagctgggctttgaggctgccgttgct
gctcttggtatgaagaccacagtaagtgaggcggagcatcctctgctttgtgaaggaacc
agacgggtgaaaggggacctggctctggctctcatgatcacctataaggacgaccagagt
aaactcaagaagatactggataaattattggacagggagagtcagacccacaagccccag
actctgagctccttctactccagcaagccggcagctggcagccagcgcagcccgtccaag
cacactgctgccggccacggcggggccgcggggggagtctccaaacacgcgcctgcgtct
tcgtcggcgaccgccatcgccacctcttcttccggctctccctctgccgcagcagtggcg
ggtgaagaggcagctcatcaggccgatctgaacacagtgcagaacaacagtacagcagga
gagagcactgctgagaccagggagcacgtgtcagatgggcctcctttatcgagtgaccag
cagaatgaaacggctcctttcaagctggaggccacggtgcccagtcggctggcactgggg
gcacgctgtggctacaaccagcgctgctggggctctcctgtccggcagaagaagaaacac
accggcatggcgagcatcgacagcagcgctccggagaccacctcggacagctcgcccact
ctcagccgccggccgctccggggaggctgggcagccacatcttgggggcggggccaggac
agcgacagcatcagcagctcttcgtctgattcgctgggctcctcctcctcaagcggctct
cgcagggcagggggcggggccagggccaagagcaccgacaccagcaggtacaaagggcga
cgaccggagtgccatgccccccacgtgcccaaccagccatcggaggcagcagcccatttt
tacttcgagctggccaagacagtgctgatcaaagccggaggaaactcctccacctccatc
ttcacccagccctcagccagcgggggccaccagggaccccacagaaacctgcacctgtgt
gcctttgaaatcggcctgtacgctcttggcctccacaactttgtctcgcccaactggctg
tccaggacctactcctcccatgtgtcctggatcactggccaggccatggagatcggcagc
gccgccctcaacattttggtggagtgttgggacggccacctcacccctccagaggtggcg
tccctcgccgaccgagcatcgcgggcccgggaccccaacatggttcgggcggcagcggag
ctggccctgagctgcctgcctcacgcccatgccctcaatcctaatgaaatccagagagcc
ctggtgcagtgcaaagagcaggacaacttgatgctggagaaggcctgcatggcagtagag
gaagcggccaagggcggaggagtgtaccccgaggttctgtttgaggtggctcaccagtgg
tactggctgtacgagcagtctgtgggtgggggctcaggccagcagcgggagacctccggg
cgctgcggggccaacgggggctcgggcaggaggcccccggagaccagctgcgttgtcctc
gacgccggcgccaacatggattcggtgggggtggcgacggtcacggcctcggtcaccaca
gcggccgtcgtgcccgtcatctctgtgggctccaccatctatcagtcccacgccatgccg
gggcaggccatggctcacccccacagccagggcctccacccctacaccaccattcaggcc
cacctccccaccgtctgcaccccccagtacctgggacaccctctgcagcacgtcccccgg
cccaccgtcttccctgtagctggggctgcatatccacagggaatgcacccagccttcatt
ggggcccagtatccgttcgccatggccactgtcccgcagcctccgatgacagccacggct
gtgaccttccccggtgtccccgtaccgtccatgactcagatcgccgtccacccgtaccac
gctgagacgggcctgcccctcagcaccaccgtagcagtaggcagcgtccactctggcccc
accatccaggccatacaggggacggccatgccctccctctcctcccagcccggctcattg
gtcagcactcctttcccagcagaggacgagcagcatagtcagccaatcagccagcagggc
ctgcactacctgcattctgcctacagagttggcatgctggcattggagatgctgggcagg
agggctcacaatgaccaccccaacaacttctccaggagcccgccttacaccgaggacgtc
aaatggctgctgggactggctgcgaggctaggagtcaactacgtgtaccagttctgtgtc
ggagcagcaaaaggcgtcctcagtccgttcgtcctgcaggagatcatcatggaggctctg
cagaggctgaaccccgcccacatccacgcccacctccgaacgcctgcgttccaccagctc
gtccagcgctgccaacaggcctacctgcagtacatccaccaccggctcatccacctgacg
ccggccgactacgacgactttgtcaacatcatccgcagcgcgcgcggcgctttctgcctg
acgcccgtgggcatgatgcagttcaacgatgtgctgcagaacctgaagagaggcaagcag
accaaggagctgtggcagcgcatctccctagagatggccaccttctccccctga
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