Anoplopoma fimbria (sablefish): 129092793
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Entry
129092793 CDS
T09102
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03440
Homologous recombination
afb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129092793 (brca2)
03460 Fanconi anemia pathway
129092793 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129092793 (brca2)
03036 Chromosome and associated proteins [BR:
afb03036
]
129092793 (brca2)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129092793 (brca2)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
129092793 (brca2)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
129092793 (brca2)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
129092793 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
129092793 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
129092793
NCBI-ProteinID:
XP_054456793
LinkDB
All DBs
Position
1:24704535..24718752
Genome browser
AA seq
3043 aa
AA seq
DB search
MVCHIKKLEELLKSTRMDLPSKNMYETYKDEIWKELGPLDPNWFEALTSQMFTEGNVSDQ
DDLCGNQEANFKTPFDKTAVDSQLFSTPKVFRHRRVVSPETEDEQSFTAEQEKETLPWTT
SQSPYLFPMSKEIPGAKYGGFHPKSHDSLDLLHTPQKSPVNYDKHISESLGAQLHPDMSW
TSSLNTPPAVPSTLILSKTDESPCPVSVSADKNVVFVRKLFPSLSNASRVGVVSPKNNDI
PTVPQGVVSPEAGQDPESHDSTQSSLNQSDLVWKQTLPDAIEDGEIRRTVASVLDGAENV
LSIFFSNSSSALRKVKTDRIKRKHIIPTKEHCGSSTDVTSTNNAASSDQRTADQEPGRLP
SPPPGKSVDNGITQWSPLSLSELPPCTVHTSCHDKSPAVQVETNISTEQLQRDSEFGQLV
VGPPLKHTDSGFTKKKRQFVYTVETSKPKVQGKQTQCQRMDSSPAVPDTGQEVNVNQLKA
PDKADCCSTGMNEMQKQGNLADVNLRPSVQAKVQDLDMSQLCKDFAQDFSQMSDPCKLNQ
VPEVTPGNGFSPSACLSAMKRAKQKAMQANPHLDCDGVGDRTHVSTAHQNNHINEVTISD
SGFQSAVADGTHGTASSFVLPSSEINVLQWTDKHRTTPEVTSTNKGKGKAYLDDILQAAE
TDAKQPSAIRESQTLGPGRDGELHIESTPAKRPSSAKGAVDNINCISLNGQARGNLPEKT
VYLPSIHASGFKTASNKGIRISSSNLERAKRLFEETEGEITSSDQPIKCAHNAKDEMSVS
HRSVKNPTTNSNQPFSSSETKEDIRCQLTASQKADVTELCTLLEEAESQFEFTQFKTEKP
KQHIQDNATSPLKVDKELDPDFLSGIDFDDSFSSEAEKHLAATVMPDKMTSISDGKTNCE
TSDVTSKSTGLSLSSAMKKESSFPEEVSSFSKHISEGSSGVMTAEPKNLYGGGHSETSKL
QNPLMLGVGFKTAGGNVLRVSRKCLSKARALFSDLEENLVTGQTSPDKQSSGTDEKRQIR
RSVDIPTGNFLHHKEDDSTFTGCGNDIERKVQGCLANTKESVCSDIQITGIREEDAAKSF
INGKRDKTTCQSGFQMASGKGISVSAKAMQAADALFRDCDSIDSNAVSHEETLPKCEVQG
MKVNFSKEPISEFTNVNAGSAARHTEVAQHNKEIHNLGFTKTLPLTNAASFLGNPSSTAK
TLPALSWTTSKNTGSSAINELCNSGGFCADSGNKALMSADALKKAECLLNEIRTPEDAKK
QLKDKEDALRTGRLANQIQVSPPKSVGFQTASGKGVAISSTALKKAKLLLSECDEVEDKI
GLKPTHSKMPVPGPTPRNSGFLAASGKHVAFSSEALQKAKALFSDISFSAEIPAVSDTRS
SDKTQGDAENTEKIHCGFTTAGGAKVHVSQKHLLKAKNILTEFDDGSLSAKAMQEADAFF
KDCEILDGNDGMSAKQNKSIAPLCRSGSEKKNLSKCKEDQRLKINISEDLGKGQTELENV
NMGLVENHENMLHPNDVENHKGAFNNTLDFSNTAALHGNPSLMTKTLSPLLFTTSKNSSS
SAMKELSKGGGFSTASGKKVSVSDDAMTKAKSLLNESTTLEDTNKQLKQNVNTFPPQTGG
FQTASGKGVAISSEALKKAQTLLSECDEVEDQIFVKPTHPKMPVPGPTPRNSGFLAASGK
HVAFSSEALQKAKALFSDISFSAEIPAVSDARSSDKTQGDAENTEKIHCGFTTAGGAKVH
VSQEHLLKAKKILTDFADVECHDSNSTSPHDIRKSDLSNVKDVKRTCNPTTASDEDMFSA
PHNSRVDDCTLIKEQAHADAFRLKEGKITPAGLGDLHDGPVEKMSCVLDYEIKQTNSREG
SKGKRPQVSSALNFQSLNLSGCTETQQKLFAQEALDCTKALLEDESLSDRSLSMTLDNVP
LQENPKYSHRSVEDRQGTGKRSAEDPDMTGQPPLKRRLLEEFDRTVDGPRGSTLHPEKSC
PNGLMKDRRIFKYSVSLHPNITRPHTSGNYCVETRLQNTTPTQSSIPEESRSAHSKKPAF
VPPFLTNTKTEGRKNTMLKDNARTPSAFVPPFKKQRTIVQESSSKPQVEEKEDKHHHLFV
TPFNSNTYVPPTKKPQSTTELTGNKSKEDPETVALAENTNDKLMNNQNLPVGCGSEDSAA
ETSHVEDKLFRCQDTFQNLHNVELARDMQDMRIRKKKRQTIRPLPGSLFLTKTSGVTRIP
LKAAVNGRPPARYTPKQLYGHGVHQHVCEISSETAESFRFDLKQFLKQIALLDGGGVQLA
DGGWLIPSKDWTAGKEEFHRALCDTPGVDPKLISEGWVYNHYRWIVWKQASMERSFPELM
GSLCLTPEQVLLQLKYRYDVEVDHSRRPALRKIMEQDDTAAKTLVLCVCGVFSRGHSPNR
QSINDTKTPQSADVKVENPFAVVWLTDGWYAIKAQLDEPLTAMLHKGRVAVGGKLIIHGA
QLVGSQEACSPLEAPESLMLKICANSSRPTRWDAKLGFHKDPRPFLLPVSCLYSGGGPVG
CVDIVVLRSYPIQWMERKPDGGVVFRSVRAEEREARRYNGHKQKAMEILFGKIQEEFEKE
DKGHNKPQHRRRTISRQGISSLQAGEELYEAVGDDPAYLEAHLSEQQMETLRTYRLSLME
KKQAELQDRYRRALESAEDSEGSCPKRDVTPVWRLCVADSLEERGSVYQLNLWRPSSDVQ
SLLKEGCRFKVYNLTTSDGKKHGASTSVQLTGTKKTQFQDLQTSQEWLSRCFQPRVSTCF
VDLQNPEFQLLCEEVDLTGYVISIIDGQGFSPALYLADGKLNFVKVRCFSSFAQSGLEDL
VKPRVLLALSNLQLRGQSSSPTPVVFAGDLTIFSTNPKEYYLQESFSQNRSLVQNLKNFF
PAAEEKLSHLVKSDGRGSISSPAQTAAFSTVRRQDTNTSVTSQQPVRSLGSFTPVGRKPP
AANCSTEKDPSSMKRKRSLDYLSRIPSPPPLLHLGSVASPCVNKTFNPPRRSGTPSTLMT
VQTPAHKPVSSPVEDEWVNDEELAMIDTQALRVGDLLQVHKAV
NT seq
9132 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgccacataaaaaaacttgaagagttacttaaatcaactagaatggatttaccc
tcaaaaaacatgtacgagacatataaagatgaaatctggaaagagctgggacccttggat
cccaactggtttgaggcactgacatctcaaatgttcactgagggaaatgtctctgatcaa
gatgacctgtgtgggaaccaagaggcaaactttaaaacaccctttgacaaaactgcagta
gacagtcagctgttctcaacgcccaaagttttcaggcaccgtcgagttgtgtcacctgaa
actgaggatgagcagtcgttcactgctgaacaagaaaaagaaacattgccatggacgaca
tcacaaagtccatatttgttcccgatgtcaaaagagatcccaggtgcaaaatatggaggt
ttccatcctaagagtcatgacagtcttgatctgcttcataccccacaaaaatccccagtc
aactatgacaaacatatatctgaaagtctcggagcacagcttcatccggatatgtcatgg
accagttctctgaataccccaccagccgtaccatccaccctaattttatctaaaacggat
gagagtccctgtccagtgagtgtttctgcagacaaaaacgttgtttttgtacggaagctt
ttcccctctctttcaaatgcatccagagttggagtggtgtcacccaaaaacaatgacata
cctaccgtcccccaaggtgttgtttcccctgaggcgggtcaggatccagagtcccatgac
tccacccaaagttcactgaatcagagtgaccttgtttggaaacagacacttccagatgct
attgaggatggagaaattcgcagaacagtagcaagtgttcttgatggagctgaaaatgtt
ctctctatatttttcagcaacagtagctcagcacttaggaaagtgaaaactgacagaatc
aaaagaaagcatatcattccaacgaaagaacattgcggcagctctacggacgtcacatca
acaaacaatgctgcatccagtgatcagagaacagctgatcaggaacctggcagacttccc
tcacccccaccagggaaatctgtagataatggaattacccagtggtctccgttaagttta
tctgaactcccaccgtgtactgtgcatacgtcttgccatgataaaagtcctgctgtacaa
gtggaaaccaatatttcaacagaacaactgcagcgtgactctgaatttggccagctagta
gtggggccgcctttaaaacacacagactctggatttaccaagaaaaaaagacaatttgtt
tacactgttgagacctcaaaaccaaaagttcaaggaaaacaaacgcagtgtcagaggatg
gactcatcaccagcggttccagatacaggacaagaagtgaatgtgaaccagttgaaagcc
ccagataaagcagactgttgcagtaccgggatgaatgagatgcaaaaacagggaaatctc
gctgacgtaaatctacgtccttctgtacaagcaaaggtccaggatcttgacatgtcgcag
ctttgcaaagattttgcacaagatttcagtcaaatgtcagacccctgtaaattgaatcaa
gtaccagaggttactcctggaaacggcttctctccatcagcttgtctgtcagccatgaaa
cgagctaagcagaaagcaatgcaagcgaaccctcaccttgactgtgacggcgtcggtgac
agaacacatgtttctaccgctcatcaaaataaccatatcaatgaggtaacaataagtgac
agtggattccagtctgctgttgcagatggcactcatgggactgcatcatcatttgttctt
cccagctcagagatcaatgttctacagtggactgataaacacaggaccactcctgaggtc
acatctacaaataaagggaagggaaaagcctatttggatgatattttacaagcagctgaa
acagatgccaagcagccaagtgcaatcagggaaagccagacactgggccctggcagagac
ggtgagttgcacatagagagcacaccagcaaaaaggcccagcagtgccaaaggagctgtc
gacaacattaattgcatttcacttaatggtcaggctcgtggcaatctgccagagaaaacc
gtttatcttccttccatccatgcatcaggattcaaaacggcttcaaataagggtatacgc
atttcttcatccaacctggagagagccaagcgtctctttgaagagactgaaggggaaata
acttcaagtgaccagcccatcaaatgtgcccacaacgctaaagatgaaatgagcgtgagt
cacagatcagtgaaaaatccaaccactaactcaaaccagccattttcttcaagtgaaacc
aaagaggatatccgttgccagttaacagcttcacaaaaagctgacgtgactgagctgtgc
actctcttggaagaagcagagagccagtttgaattcacacagtttaaaactgaaaagccg
aaacaacacattcaagataatgccacctctccactaaaagttgacaaagaacttgaccca
gattttctttcgggtatagattttgatgacagttttagttcagaagctgaaaagcacctg
gcagccactgtgatgcctgacaaaatgacctccatttcagatggtaaaacaaactgtgaa
acatctgacgtcacaagtaaatccacaggtttgtcgttgtcgagcgcaatgaaaaaagaa
agttcctttcctgaagaggtgtcttccttttcaaagcacatctccgaaggcagttctggt
gttatgacagctgaacccaaaaatctttacggaggtggtcacagtgaaacgagcaagctg
cagaatcctttaatgcttggtgttggatttaagacagcaggaggaaatgttttgagagtt
tcaagaaagtgtctgagcaaagctagagctttgttttcagatttggaggagaaccttgtg
acgggtcaaacatctcctgacaagcaaagcagtggaaccgatgaaaaaagacagattagg
cgcagtgtggatattccaactggtaactttctgcatcataaagaggatgattctacgttc
acaggttgtggtaacgatattgagaggaaggttcagggctgtttggccaacacaaaggag
tctgtctgttcagacatacagatcacaggcataagggaagaagacgctgcaaaaagtttc
ataaatggcaaaagggacaaaaccacgtgtcaaagcgggttccagatggccagtgggaaa
gggatttctgtttcagcaaaagctatgcaggcagcagacgctctcttcagagactgtgat
tctattgacagtaacgctgtcagtcatgaggaaactcttccaaaatgtgaagttcaagga
atgaaagtaaacttttctaaagagccaatcagtgagtttacaaatgtgaatgctggatca
gctgctcgccatacagaggttgcacaacataacaaggagattcacaatttaggttttacg
aaaacactgcctttaacaaatgcagcctccttccttggaaacccgtcttcgactgcaaag
acacttccagctctttcatggacaacatcaaagaacactggctcctctgccatcaatgaa
ttgtgcaatagtggtggattttgtgcagacagtgggaacaaagctttgatgtcagctgat
gcactgaaaaaagcagaatgtctcttgaatgaaattcgtacacctgaggacgcaaaaaaa
caactgaaagataaagaggatgctttaagaaccggccgtctcgccaatcaaattcaagtt
tcaccacctaaaagtgttggatttcagacagccagtggcaaaggagtggccatttcatcc
acagctctcaagaaagcaaaactgttgttgagtgaatgtgatgaagttgaggataaaatc
ggtttaaaaccaacgcattccaaaatgccagttcctggtccaacacccaggaatagtgga
tttcttgcagccagtgggaagcatgtggcattttcatctgaggccctccagaaggcaaaa
gctctcttcagtgacatcagcttcagtgcagagatcccagctgtttcagacacaaggagc
agtgacaagacacaaggcgatgctgaaaatacagagaaaatacattgtggtttcacaact
gcagggggagctaaagtccatgtgtcacagaaacatctgctgaaagcaaaaaacattttg
acagaattcgatgatggttctctttcagcaaaggcaatgcaagaagcagatgctttcttc
aaggactgtgaaatactggatggtaatgatggtatgtcagctaaacaaaataaaagtata
gcacctttgtgcagaagtggcagcgagaagaaaaacctttcaaaatgtaaagaagatcag
aggttgaaaataaacatctctgaagatcttggaaagggacaaactgaacttgaaaatgtg
aacatgggattagttgaaaaccatgaaaatatgctgcatcctaatgatgtggagaatcac
aaaggtgcttttaacaatacattggatttttccaacacagctgctttacatggaaaccca
tctttgatgacaaagaccctttcccccctgttgttcacaacatcaaagaacagtagttcc
tccgccatgaaagaattgagcaaaggtggtggattctccacagccagcgggaagaaagta
tccgtgtctgatgacgcaatgacaaaagcaaagtctcttttgaatgaaagtactacatta
gaggacacaaacaaacaactgaaacaaaatgtaaacacctttccaccacagactggggga
tttcagacagccagtggcaaaggagttgctatttcatctgaagccctaaaaaaagcacaa
actctgttaagtgaatgtgatgaagttgaggatcaaatctttgtaaaaccaacccatccc
aagatgccagttcctggtccaacacccaggaatagtggatttcttgcagccagtgggaag
catgtggcattttcatctgaggccctccagaaggcaaaagctctcttcagtgacatcagc
ttcagtgcagagatcccagctgtttcagacgcaaggagcagtgacaagacacaaggcgat
gctgaaaatacagagaaaatacattgtggtttcacaactgcagggggagctaaagtccat
gtgtcacaggaacacctgctgaaagcaaaaaaaatattgaccgattttgctgatgttgaa
tgtcatgattcaaactcaacaagcccacacgacatccgtaagtcagatctatcaaatgtg
aaagatgtgaaaagaacctgtaatcccaccacagccagtgacgaggacatgtttagtgct
cctcataattcgagagttgacgattgcactttaatcaaagagcaggcacatgcagatgca
tttaggttaaaagaaggcaaaattaccccagcagggttgggcgacctccatgacggccct
gtagagaaaatgtcatgtgtgttggactatgagataaagcagacaaacagcagagagggg
tctaaggggaaaaggccacaggtgtcttcagctttaaactttcagtcactaaacctaagc
ggctgcactgaaacccagcagaagttgttcgcccaggaagctctggactgcactaaagcc
ttgttagaggacgaaagtctctctgaccgaagtctctcaatgactttagacaatgtgccg
ctgcaagaaaaccccaaatacagccacagatctgtagaggaccgacaggggacagggaaa
agatcagcagaggaccccgatatgactggtcagcctccccttaaaagacgattactggaa
gagttcgacagaactgttgatggtccaagaggctccaccctccatccggaaaaaagttgt
ccaaatggtctgatgaaagacagaaggattttcaagtacagcgtctctctccatccaaac
atcacgaggccacacaccagtggaaactactgtgtggaaaccagattgcaaaatactaca
ccaacacaatcctcaatcccagaagaaagcagatcagcacattccaagaagccagcattt
gttcctcctttcctcacgaatacaaagacagaaggtcgtaagaatacaatgctcaaggac
aacgcaagaacaccttctgcatttgttcctccattcaaaaaacaaagaactattgtccaa
gagagctcctccaaaccacaggtggaggagaaggaggataaacaccaccatctctttgta
acgccctttaacagcaacacgtatgtaccgcccactaaaaaaccccaaagcactacagaa
ttaactggtaataaaagcaaagaagaccctgaaacggtggccttggcagagaatacaaat
gataaactgatgaataatcaaaacctccctgttggctgtggatcagaggactctgctgca
gagacatcacatgtggaggacaaattgttccgatgccaagacacatttcagaatcttcat
aatgtagagctggcacgagatatgcaagacatgaggatcaggaaaaaaaagcgccagacc
attcgacctttgccaggaagtttgtttctaaccaaaacctcaggagtgactaggattcca
ttaaaggctgcagttaatggaaggcctcctgcaagatacaccccaaaacagctgtatgga
cacggagttcatcaacatgtgtgtgagatctccagtgagactgcagaatcttttcgcttc
gatttgaagcagttcctcaaacagatagctcttctagacggaggtggtgttcagcttgct
gatggaggatggctaatccccagcaaggattggactgcaggaaaagaagagtttcataga
gcattatgtgacaccccaggtgtggatcctaaactgatcagtgagggttgggtgtacaat
cactaccgatggattgtgtggaagcaggcgtccatggaaagatcatttccagaactaatg
ggcagcctctgtctcaccccagagcaggttctcctgcagctgaagtacagatatgatgtt
gaggtggaccacagccgcaggccggctctaagaaagatcatggaacaggacgacacagca
gctaaaaccctggtcctctgtgtctgcggggtcttctccaggggtcactccccaaacaga
cagagtatcaatgacaccaagactccacaaagtgctgatgtcaaggtcgaaaatccattt
gcagttgtctggctgacagacggatggtatgccattaaagcccagctggatgaacctttg
accgccatgcttcacaaaggtcgagtggctgtcggtggcaaattgatcatccatggggct
cagctggtgggatcacaggaagcttgttcccctctggaggcacctgaatctctcatgtta
aagatttgcgccaatagcagcagaccaacacgatgggatgcaaaactgggatttcacaag
gatccaaggccattcctgcttcctgtctcctgtttgtacagcggcggaggaccagtagga
tgtgtggacattgtcgtactgagaagctaccccatacagtggatggagaggaaaccagat
ggaggcgttgtcttccgatctgttcgtgccgaagagagggaggcgagacgatacaacggc
cacaaacaaaaagctatggagatcctgttcggcaagattcaagaagaatttgaaaaggag
gacaaaggtcataacaaacctcaacatagaagacggacgatcagtcgtcagggtatttcc
agtcttcaagctggagaggagctgtatgaagcagtgggggatgacccagcttacctcgag
gctcatctgagtgagcagcagatggagaccttacgcacctacaggctttctctgatggag
aagaagcaggctgaactacaggatcgctaccgacgagctttagaaagtgcagaggacagt
gaaggtagctgtcccaagagagacgttacacctgtgtggagactctgtgttgctgattcc
ttggaagaacgcggcagtgtttaccagttgaacctttggcgaccctcctctgatgttcag
tctttactgaaggaaggctgtcgattcaaagtctataatctcaccacttcggatggaaag
aaacatggtgccagcacatctgttcagctgactgggacaaagaaaacacagtttcaggac
ctacagacttctcaggaatggttatcaagatgtttccagccaagggtctctacctgtttt
gtggatcttcaaaaccctgaattccagttgctgtgtgaagaagttgatctcacaggatat
gtaatcagtatcatagatggacagggtttctctcctgcattgtatttggctgatgggaaa
ctcaactttgttaaagtgcgctgtttcagcagctttgctcagtctggcttggaggatttg
gtaaaaccacgtgtcctgttggctctgagcaacctgcagctgagaggtcagtcctcctct
cccactcctgttgtgttcgctggagatctgaccatcttctcaacaaaccccaaggaatat
tacctccaggaatccttcagccaaaacagaagcctggtccagaatctgaaaaacttcttt
ccagctgctgaggagaagctttcacatttagtcaaatctgatggccgggggtccatctct
tctccagctcaaaccgcagctttttcaacggtcagaagacaagacacaaatacaagtgtg
acgtctcagcagccagtcagaagccttggttccttcacacctgtcggcaggaaaccccct
gcagcaaactgttcgacagagaaggaccctagcagcatgaagaggaagagatctctggac
tacctgtctcgtatcccgtctccaccacctctcctccatctgggctcagtggcttctcca
tgtgtaaataagacattcaacccccctcggaggtctgggacacctagcactttaatgact
gtacagactccagctcacaaacctgtcagttcaccggtagaggatgaatgggtgaatgac
gaggaactggctatgattgatactcaggctttgcgtgttggtgatttattgcaggtacat
aaggctgtgtga
DBGET
integrated database retrieval system