Anoplopoma fimbria (sablefish): 129092966
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Entry
129092966 CDS
T09102
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03440
Homologous recombination
afb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129092966 (brip1)
03460 Fanconi anemia pathway
129092966 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129092966 (brip1)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129092966 (brip1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
129092966 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
129092966 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
129092966
NCBI-ProteinID:
XP_054456847
LinkDB
All DBs
Position
1:12760020..12819252
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AA seq
1242 aa
AA seq
DB search
MATSSVEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNYGQHCLLESPTGSGKSLALLCSA
LGWQQAQLAKLKEGGSLLEDKSQSDKNFGDYKKSDVTMPCQCVCHSKVSSTTATTTAKPD
VVDLTVSPSKESTQLLAPEKMPSPEELQPKKLSIASRLSEKFLSSLSSDHGKDDDFQPDK
KRIRTAEHKQRKRQRLEQGVVFIDDELDNEPSGPQGWTMEPNTQAAGQSSSCCSPEPCSR
CLCSSTKDGVKDKANDGKKKIPKIFFGTRTHKQITQIAHELKRTVYSGVPMTILSSRGHT
CVNPEVVPHSNRNERCKDLLDAKDGRSCHYYHGVQRMRDQRTLQRVHGLHDAWDIEDLVA
IGKRLRSCSYYAARELMQEASIIFCPYNYLLDPMIRESMEIDLTGQIVVLDEAHNIEDCA
RESASFTLDHHSLLMSRDELDSMVNNNIRRSEHEPLRNFCYSLINWIQESQSLMSERGYE
QACKVWNGKDVVGIFYNMGITADTFNNLKKNLAAVLEKEERVGLINGKEDMVQVPTISSA
TSTVLKNLFMVLGFIYSSEDNCRAAEDYRIALQKSYAWTNQVPSDAPDAQGFFVRPHRRQ
RQSIRVKTEVLTLSFWCLNPALAFCDFSKSVHSIVLTSGTLSPMGSFSSELGVKFSIQLE
ANHVINKSQVWVGTVGEGPQGRKLCATFQHTETYAFQDEVGALLLHVCQVVAKGVLCFLP
SYKMLDKLRDRWNNTGLWKKLELQKAVIAEPRGGGKGDFDELLQRYYDAIKYCEEERDGA
LLIAVCRGKVSEGLDFTDDNARAVITIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGNR
WYEIQAYRALNQALGRCIRHRNDWGALILVDDRYRNNPNKYITGLSKWVRQLVQHHGTFS
NAIQSLVAFSQVQQKVEGPPADSQALSSVVSSSNSHLSVCVQGLPNATPRPCVKPPEPQQ
DTSPSTTHFFSLTQLKAEQSEKADWLKAMPSPQAEPPLHQKTTANPLYNIFTSSHISTCF
KKPNLKEKAASISSQQLETSNHSEHQEKQQISTPQTKTEATCLKKGSGDRSIEIKVEPHR
LALEPSRETTLSSCESQLLSEDNLDKDEDEEEEEEVEEDQTVFFTPELFEDEDKKGSPQS
ETKTKSPPRMLLGAERPTLLSEELFGSEQARGQGSASAFDGQSAISVSKESTELSQRQQD
EIIRQKQGEEEEQVDNQSSQTGSRLRRLSRSRKPAPSTPSGN
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggctacatcctcagtggagtacaccattggaggggtgaagatcaacttcccctgcaag
gcttacccgtcccagctggctatgatgaattcaatcgtacgaggactgaactatgggcag
cactgtttgctggagagccccactggaagtggaaagagcttggctttgctgtgctctgct
ctgggctggcagcaggctcagttggctaaacttaaagaaggaggaagccttttggaggac
aagagccagtcggataaaaactttggcgactataagaagtcagatgtaaccatgccctgt
cagtgtgtgtgccacagcaaagttagcagcaccacagctacaacaacagccaaacccgat
gttgtggacctcactgtgtcaccctccaaagagtcgacgcagcttctagcacctgaaaag
atgccatcacccgaagagttgcagcccaagaaactgtctatagcctctcgtctgtctgag
aagttcctgtcctccctcagctctgaccacgggaaggacgacgactttcagccagataag
aaacgcattcgaactgccgaacacaagcagcgtaaaaggcagcgtcttgagcagggagtg
gtattcatagatgatgagctggataatgagccttcaggtcctcagggttggaccatggag
ccaaacacccaagcagctggtcagtcctcatcatgctgctcccctgagccctgttcccgg
tgcctgtgctcttcaacaaaagacggtgtgaaggacaaagccaatgatggcaagaagaag
attcccaagatcttctttggcactcgaacacataaacagataactcagatcgcccacgag
ctgaagcgcacggtttattccggtgtgcccatgaccattttatcaagtagaggtcacaca
tgtgtcaacccagaggtggtgcctcactccaaccgcaatgaacgctgcaaggatcttctg
gatgccaaagatggcaggtcatgccactactaccatggtgtccagaggatgagagaccag
cgcacactacagcgggtccacggactccatgacgcgtgggatatagaggaccttgtcgca
ataggaaaacgtctccggtcatgctcctactatgctgcccgtgaacttatgcaggaagcc
tccatcatcttctgtccatataactacctacttgacccaatgatcagagagagtatggaa
atcgacctgacaggccagattgtggtgctggacgaagcccacaacattgaggactgtgca
agagagagtgccagcttcactttagaccaccatagtctgctgatgtccagggatgagctt
gacagcatggtcaacaacaacatcaggcgctccgaacacgagccactcaggaacttctgt
tatagcctgatcaactggatccaggagagccaaagcctgatgtctgaacggggatatgag
caggcctgtaaagtctggaatggaaaggatgtagtgggcatcttttacaacatgggcatc
actgctgacaccttcaacaatctgaagaaaaacctggcagcagtgttggagaaagaggag
cgtgttggtttgatcaatggtaaagaggatatggttcaggttccaaccatcagctcggca
acctccactgtcctcaaaaacctcttcatggtgctgggcttcatctactcctctgaagac
aactgcagggctgctgaagactaccgaatagctctgcagaagagctatgcttggacgaac
caagtcccatctgatgcacctgatgcccagggcttttttgttcggccacaccgcaggcaa
cggcagagcatccgagtcaagacggaagtcttgacccttagcttctggtgcctcaaccct
gctctggctttctgtgacttcagtaagtcggtgcacagcattgtgctgacctcaggaacc
ctgtcacccatgggctccttctcctctgaacttggggtgaaattctccatccagctggag
gccaaccatgttatcaacaagtcccaggtttgggtgggcactgttggtgaaggaccccaa
ggcagaaaactctgtgccaccttccaacatactgaaacgtatgccttccaggacgaggtg
ggtgcgctgctgctccatgtctgccaggtcgttgccaagggtgtgctatgctttttgcct
tcttacaagatgctggacaagttgcgagacagatggaacaacaccggtctctggaagaag
ctagaactacagaaagccgtgatcgcagagccccgcggtggtggcaagggggattttgac
gaactgcttcagaggtactacgatgccatcaagtactgtgaggaagaaagagatggtgcc
ctgctgatcgctgtctgtaggggtaaagtgagtgaaggactagacttcactgatgacaat
gccagggcagtgatcaccattggaattcccttcccaaacatcaaagacctccaagtggaa
ctaaagatgaagtacaatgaccagcactgcaaatcacgaggtcttctcccaggcaatcgt
tggtacgagattcaggcctacagggctctaaaccaggccctgggaaggtgtatccgccac
aggaatgattggggtgccctaattctagtggatgaccgttaccggaataatcccaataag
tacatcacaggtctgtctaaatgggtccgccagctcgttcagcatcatggcaccttcagc
aatgctatacagtctctggtagcattctctcaggtgcaacagaaggtggaggggcctcct
gcagacagtcaggccctcagctctgttgtctcatcttcaaacagtcacttgtcagtatgt
gtacagggtctgcccaatgccacaccccggccatgtgtcaaaccgcctgaaccccagcag
gacacaagcccctcgactacccatttcttttctcttacacagttgaaagctgagcaaagt
gaaaaagcagattggttgaaggcgatgcccagtccacaagcagagcccccattgcatcaa
aaaacaacagctaatcctctttacaacattttcacctctagccacatcagcacctgcttc
aagaagcccaacttaaaagaaaaagcagccagtatttccagccagcaattggaaacatct
aatcactcagagcaccaggagaaacagcaaatatccactccacaaacaaagactgaagca
acttgtcttaaaaaagggtctggagacaggtccattgaaatcaaagtggaaccacacagg
ctggctctggagccttcccgagaaacaaccctttccagctgtgagagtcaacttttgtca
gaagacaatcttgacaaagatgaagatgaagaggaggaggaggaggttgaggaggaccaa
actgttttctttacaccagaacttttcgaggatgaagacaaaaaaggcagcccacagagc
gagacgaagaccaagtcacctcccaggatgcttttgggggcagagaggcctaccctgctc
tcagaagaactttttggctctgaacaggcccgagggcaagggtcagcctctgcttttgat
ggacagagtgctatttcagtcagtaaggagagcacagagctatcacagagacagcaagat
gaaatcataagacagaagcaaggtgaggaggaagagcaggtggataaccagagcagtcag
acaggcagtaggcttcgcaggttgtcgaggtccagaaagccagctccctctactccatca
ggtaactaa
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integrated database retrieval system
