Anoplopoma fimbria (sablefish): 129093136
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Entry
129093136 CDS
T09102
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03020
RNA polymerase
afb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129093136 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
129093136 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129093136 (polr2a)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129093136 (polr2a)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129093136 (polr2a)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129093136 (polr2a)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129093136 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
129093136
NCBI-ProteinID:
XP_054457029
LinkDB
All DBs
Position
7:complement(19576835..19587403)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIIKPRPMWTGKQIFTLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVLTNAHVQGTLEREYDKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTTTDLNPLRVVEGVQDLSKKLVI
VNGEDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLTTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEEAN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgaacttaaacggatgtccgttacagaagggggaatcaag
taccccgaaacaacagaaggtgggcgccctaaactgggcggccttatggatccaagacaa
ggggtcatagaacgaactggaagatgtcagacatgtgcaggcaacatgacggaatgccct
ggccacttcgggcacatagaactggcaaagccagttttccatgttggcttcgtaacaaag
ataatgaaggttcttcgatgtgtctgcttcttttgctccaagctattagtggattcaaac
aatcccaagatcaaagacatcttgataaaatctaaagggcagcccaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatctgtgaaggaggagaggagatggacaac
aaatttggaatggaacagcaggagactgaagaggacattaccaaggagaagggccacggt
ggctgcgggcgctaccagccacgtatcaggcgctctggcttggagctctatgctgagtgg
aagcacgttaacgaggattcgcaagagaagaaaatcctgctgagccctgagcgcgtgcac
gagatcttcaagcgcatctcggacgaggaggacgtcatcttgggcatggaccccaagttt
gcacgaccagaatggatgattgtaactgtgttgcctgtgcctccactggctgtcaggcct
gctgtagttatgcagggctctgctcgcaaccaggatgacttgacccacaagctggctgac
atagtcaaaatcaacaaccagctgagaagaaacgagcagagtggtgctgcagctcacgtc
atagctgaagatgtcaaactgctccagttccatgtagccaccatggtggacaacgaattg
ccaggcctgccaagggcaatgcaaaagtccggtcgccctctcaaatccctaaaacagcgt
ctaaaggggaaggaggggcgtgtccgaggtaacctcatgggcaagcgtgtggacttctct
gcgcgaactgtcatcaccccggaccccaacctgcaaatcgaccaagtgggcgtaccacga
tccatcgcagccaacatgaccttcccagaaatagtcacaccctttaatattgacagatta
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcattcgggac
aatggcgacagaattgacctgcgattccacccgaaaccaagtgaccttcacctgcagatt
ggctacaaggtggaaagacacatgtgtgacggtgacatcatcatctttaacagacaacct
acactacataaaatgtccatgatggggcacagggtgcggattctgccgtggtccacattt
cgactcaacctcagtgtcaccaccccatacaacgctgactttgacggggatgagatgaac
ctacacttgcctcagtccctcgagacgagggcagagatccaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
accgctgtccgcaagttcaccaaaagagacgtattcttagagaggggtgaagtgatgaac
ctcctcatgttcctctccacttgggatggcaaagtgcctcagccggccatcatcaagccc
cgtcccatgtggacaggcaagcagatcttcactctaatcattcccggacacatcaatgtg
atccgcacacacagcacccatcccgacgaggaagacagcggcccgtacaagcacatctca
cctggggacaccaaggtcgtagtggagaacggcgagttgatcatgggaatcctgtgcaag
aaatctctgggtacctcagccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcactccattggtattggtgactccattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtaatcgagaaagcccacaac
aacgagctggagccgacccctggtaacactctgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgcccgtgacaaaacaggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggcgggttctaagggatcaaagattaacatctca
caggttattgcagtggtgggccagcagaacgtggagggtaaacgaatcccctttggcttc
aaacaccgcacgctgcctcactttattaaggatgattacggtcctgagagcagaggcttc
gttgagaactcctacctggctggccttacgcctacagagttcttcttccacgccatggga
ggcagagagggtcttatcgacacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtacgatggcacggtgcgtaactcc
atcaaccaggtggttcagttgcgttacggcgaggacggcctggcaggagagaacgtggag
ttccaaaacgtggcgacacttaaaccctcgcacaaggcctttgaaaagaagtttaagttt
gattgcaccaacgagcgagctctgaggcggatcctgcaggaagacgtggtaaaagacgtc
ctgaccaacgcccatgtgcagggcaccctggagagggaatatgacaagatgaaggaggac
agagaggtcctccgagccattttccccaccggggacagtaaggtggtgctgccatgcaac
ctggccagaatgatatggaacgctcagaagatcttccgcatcaacattcgaaccacaaca
gacctcaatccactaagggtggtcgagggtgttcaagatctgagtaagaagctggtgatt
gtgaatggtgaggaccccctcagtaaacaggcccagcagaacgccaccctgctcttcaac
atccacctgcgttccacgctctgctccaaacgcatgaccgaggagttccgccttaccacc
gaggctttcgactggctgctgggagagattgagaccaagttcaaccagtccattgctcac
ccgggtgaaatggtcggcgctctggccgctcagtcgctgggagagccggccacccagatg
accctgaacactttccactacgccggtgtgtcagccaagaacgtaacactcggtgtgccc
cgtctaaaggagttgatcaacatctccaagaggcccaaaaccccctcgctgactgttttc
ctgctgggtcaggcggcccgcgatgctgagagggccaaggacatcctctgtcgactggag
cacaccacactgagaaaggtgacagccaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gacgtgacgcgcatttcgccgtggctgctgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgactatggagcagattgcggagaagatcaacgcaggttttggagatgac
ctgaactgtattttcaatgacgacaacgctgagaagctcgttctgcgaatcagaatcatg
aacagcgacgagaataagttccaagaggatgaggaggtggtggacaaaatggatgatgat
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagaccgacaataagaagaagatcatcatc
acagaggagggtgagttcaaggccctgcaggagtggatcctcgagactgacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtcgatcccgtcaggaccacctccaacgacatc
gtggagatcttcacggtcttgggaatcgaggcagtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggctcctacgtcaactaccgtcacttgtctctgctttgt
gacaccatgacctgccgcggtcacctgatggccatcacacgtcacggcatcaaccgacag
gacacaggaccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcatcgcacgccgagagcgaccccatgaagggtgtgtcggagaacatcatgctcggccag
ctcgccccggccggcacaggatgcttcgacctgctgttggatgctgagaagtgtaaatat
ggaatggagatccctacgaacatacccggcatcagcgtggctggacccactggaatgttc
tttggcacggtgccgagtcccatgagcggtatgtcacccgccatgaccccgtggaacacc
ggagcaaccccggcctacggcgcctggtctcccagtgtcggaagcggaatgacccccgga
gcggccggtttctcccccagtgcagcgtcagacgcaagtggcttctctccaggctactcc
cccgcctggtctcccactcctgggtccccaggatccccgggacctgccagcccgtacatc
ccgtctccaggtggagccatgtctcccaactactcccccacctccccggcctacgagcct
cgctcccccggaggctacacccctcagagtcccggctattctccaacctcaccctcctac
tcccccacttctccctcttactccccaaccagcccgaactacagcccgacatctccctcc
tactcacccacctcgcccagttactccccgacttctccgtcctattctcccacgtctcct
tcttactccccgacgtctccctcctactctcccacctccccgtcctactcccctacttcc
ccctcctactctcccacctcgccgagctacagcccgacgtcgccgagttacagcccgacg
tcgcccagctactcgcccacctcgccttcctactcccccacctccccctcttattctcca
acctctccatcttactcccctacctccccgtcctactcacccacctctccctcctactcg
cccaccagtccgagctacagcccgacgtcgccgaattacacgcccacctcacccagttac
tcccccacttccccttcctactcccctacatcgccctcttattccccaacctcccccaat
tacaccccgaccagccccaactactcccccacctctccctcttactcccccacctctccg
tcctactccccctccagtccacgttacacccctcagtcgcccacctacacacccagctcc
ccctcatacagccccagctctccctcctactcccctacctccccaaaatacaccccgact
tccccctcatacagccccagttccccagagtacacccccacttctcccaagtactccccc
acctcgccaaagtactccccgacatcgccgaagtactccccgacttctcccacctactcc
ccaacgaccccaaaatacagccccacctctcctacctactcccccacctcgcccacatac
actcccaccagccccaaatactcccctacatcccctacttactccccaacttcacccaag
tactcgcccacgtcgcctacgtactcgcccaccagtcccaaaggctccacgtacagcccc
acctcccctggatacagccccacctcacccacctacagcccggccatcagcccagacgac
agcgacgaggaagccaactga
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integrated database retrieval system
