Anoplopoma fimbria (sablefish): 129093252
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Entry
129093252 CDS
T09102
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129093252 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129093252 (dhx15)
03009 Ribosome biogenesis [BR:
afb03009
]
129093252 (dhx15)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129093252 (dhx15)
Spliceosome [BR:
afb03041
]
Complex A
U2 snRNP components
U2 related factors
129093252 (dhx15)
Complex B
129093252 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
129093252 (dhx15)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
90S particles
Helicases
129093252 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_29
nSTAND3
DUF3915
Motif
Other DBs
NCBI-GeneID:
129093252
NCBI-ProteinID:
XP_054457180
LinkDB
All DBs
Position
7:16746555..16772964
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AA seq
760 aa
AA seq
DB search
MFKRHRLDIGDDCSPGKRRPADGRDRDRDRDERSRDRDRDRPRERDWDREVKSPAVPANL
AAGSAGSAGFIKPNPIQQQINPYTNLPHTPRYYDILKKRLQLPVWEYRERFTEILMRNQS
FVLVGETGSGKTTQIPQWCGDMVRSMPGSKRAVACTQPRRVAAMSVAQRVADEMDVMLGQ
EVGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEVDEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKLADESKMRFAHIDGDHMTLLNVYHAFK
QNHDSTQWCYENFVNYRSLMSADNVRSQLSRIMDRFSLPRRSTEFNSRDYYTNIRRALVT
GFFMQVAHLERTGHYLTAKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKISPQYYEMGNFPQCEAKRQLERIIAKISSKEFTQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagcgacatcgtttagatataggtgatgattgttcaccgggtaaaaggaggcct
gcggacgggcgtgaccgggacagagatcgcgatgaacggtcgagggacagggaccgggac
cgacctcgagagcgtgactgggacagagaggtgaagtcccccgcggtccccgccaaccta
gctgcaggtagcgcaggcagcgcaggcttcattaagccaaaccctattcagcagcagatc
aacccttacaccaacctgccccacacgccacgctactatgacatcctgaagaagcggctg
cagctgcctgtctgggagtacagagagcgcttcactgaaatcctgatgcgtaaccagtct
tttgtgctggtgggagagaccggctctggaaaaaccacacagatacctcagtggtgtggg
gacatggtgcggtcgatgccgggatcaaagagagcagtggcctgcacccagcccaggagg
gtagcggccatgagcgtcgcccagagggttgctgatgagatggatgtcatgctgggccaa
gaggtgggctactccatcaggtttgaggactgcagctctgccaagacagtactcaagtac
atgacagatggaatgttgctgcgggaggccatgaatgatcctctgctggagcgctatggt
gtcatcatattggacgaggcacacgaacgcacattagctacagatatcctcatgggagtc
ctcaaggaggtggtccgccagagggctgacctcaaggtgatcgtgatgagtgccacgctc
gatgccggcaagttccaggtgtactttgacagctgcccactgctaactatccccggacgc
acgcatcccgtggagattttctacacgcccgagccagagcgggactacctggaagctgcc
atccgcacagtgatccagatccacatgtgtgaggtggatgaaggggacgttctgctcttc
ctcactggacaagaggaaattgacgaagcctgcaagcggatcaagagggaggtcgacgac
ctgggccctgaagtcggtgatatcaagatcatcccgctgtactccacactgcctccacag
cagcagcagaggatctttgaaccacccccacccaataaaccaagtggtgccatcggaaga
aaggttgtcgtgtccacaaacatcgccgagacgtcgctgaccattgacggcgtggtgttt
gtgattgatcctggatttgccaagcaaaaggtgtataatccacgtatcagagtggaatcc
cttttggtaacagccatcagcaaggcctcggcccagcagagggcggggagggctggaagg
acacgcccaggaaagtgtttccgcctttacacagagaaagcttacaagacagaaatgcag
gacaacacgtatccagagattctgaggtctaatctgggctccgtggtgctgcagttgaag
aaactgggtattgacgacctggtgcactttgacttcatggacccaccagccccagagacc
ctgatgcgagccctggagttgctgaactacctggcggcgctcaatgacgacggtgacctg
acagagctgggctccatgatggcggagttccccctggacccccagctggccaagatggtc
atcgccagctgtgaattcaactgttcaaacgagatcctctccatcactgccatgttgtca
gtcccacagtgcttcgtccgacccacggaggctaagaagttggccgacgaatccaagatg
cgcttcgcccacatcgacggggatcacatgacgctgctcaacgtctaccacgcctttaaa
caaaaccacgactccacccagtggtgttatgagaacttcgtcaactaccgctcgctgatg
tcggcagacaacgtacgctcgcagttgtccaggatcatggaccgcttcagcctgccgagg
cggagcaccgagttcaacagcagagactactacaccaacatccgtcgtgcgttagtcact
ggcttcttcatgcaggtcgctcacctggaacgcaccggccattacctgacagcgaaggac
aaccaagtcgttcagctgcacccctccactgtgctggaccacaagccggaatgggtgctt
tacaacgagtttgtgctcacaaccaagaattacatccgcacgtgcactgacatcaaacca
gaatggctggtgaaaatatccccgcagtactatgagatgggtaacttcccccagtgtgaa
gcaaagagacagttggagcgtatcattgcaaaaatctcatcaaaggagttcactcagtac
taa
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integrated database retrieval system
