Anoplopoma fimbria (sablefish): 129093439
Help
Entry
129093439 CDS
T09102
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129093439 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
afb04990
]
129093439 (lrfn1)
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
SALM family
129093439 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
afb04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
129093439 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_5
Ig_2
fn3
ig
LRR_9
Ig_DSCAM-DSCAML_C
LRR_14
C2-set_3
Sp38
DUF4834
Motif
Other DBs
NCBI-GeneID:
129093439
NCBI-ProteinID:
XP_054457437
LinkDB
All DBs
Position
1:complement(22441962..22446850)
Genome browser
AA seq
758 aa
AA seq
DB search
MDRLVLCMLLCAAIVKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPSIDRKTVELRLTD
NFITIIRRKDFFNMTSLVHLTLSRNTISQITPHSFVGLRSLRALHMDGNRLSVIKTDHFK
GLINLRHLILGNNQIHMVAPTSFDEFVSTIEDLDLSSNNLRGLPWEAIARMTNINTLTLD
HNLIDYIEAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDTKGSISSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPDHLMDKYFWSIQEEEFICEPPLITKHLSTKPFV
MEGQGVTLKCKAVGDPDPEIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGISTAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
TELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKNFLINDLAAGREYD
LCVLAVYDDGITSLTATRVVGCVQFHTANEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSGPEDSKTKVSSSMHSQTNGSQQRLQRSASKQPSDDGQRDAHAPKECM
ALVLRVENEKKENPASTTAILEVELPPMTVDKMNRRTSLDAQRSGPPSEDTQTDSSLTGS
TMSLCLIGPNAGTKEAPRLKDKKNALANMGLLPNELARTRHRFSFDGGDYSIFQSHSYPR
RARTRWHKSTNQLNTESSPLANRRVTFSSTEWMLESTV
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtctggttctctgcatgctgctgtgtgcagccattgtgaagggatacagctgc
cccggccgctgcatctgtcagcacctctccccaactctgactctgctctgtgctaaaacg
ggtttgttgtttgtaccacccagcatcgaccgcaagaccgtagagctgcgactcacagac
aacttcatcaccattatccgcaggaaagactttttcaatatgaccagtttggtccacctc
accttgtcccggaacaccatcagccagatcaccccccactcctttgtcggcctgcgatcc
ctgcgggcgctccacatggatggaaaccgcctcagtgtcataaagactgaccactttaaa
ggcctcatcaacctgcgacacctcatcctcggaaacaaccagatccacatggtggcccct
acctcctttgatgagtttgtttccaccatagaggacttggatctttccagtaacaacctg
cgcggcctcccctgggaagccatagccagaatgaccaacattaacacgctcactctggac
cacaacctgatcgactacattgaagctgggactttcacgttgctaaccaaactggtccgc
ctggacatgacctctaacagactgcagaaactgccgccagacagcctgttccagcacgcc
caggtcctttctgacaccaagggctccatctcctccactctggctgtgagcttcggtgga
aaccctcttcactgtaactgtgagctgctgtggctgcgcaggctgacaagagaggatgat
ctggagacctgtgcctcgccagatcacctcatggacaagtatttctggtccattcaagag
gaagagtttatctgtgagcctccgctgatcaccaaacatctttctactaagccctttgtg
atggaagggcagggtgtgactcttaaatgcaaagcagtgggtgatccagacccagaaatt
cactggcggtcaccagacggcaagctggtgcataataactctcgcaccatcctttatgat
aatggcacccttgatattctcatcaccacgctgaaggacagcggcgcatttaattgtgtg
gcgtccaatgccgcaggcatttccacagctgctgttgagatcaacatgattcccttaccc
ttgtttgttaacaacacgggccacatgcgtgaggaccccggcctctcagacatcaccacc
tcctccaaatctggcaacgacaccaagggctacgacaagcaggacaggagggtgatggtc
accgagctgacctcctcctccgctgtgatccgttggccttctgagcgccatatccctggc
atcaggatgtaccagattcagtacaacagcacggcagatgacactttggtgtacagaatg
atcccatctaccagcaagaacttcttaatcaatgatctggccgcaggacgagagtatgac
ctttgcgtgctggcggtttacgacgacggcatcacatcattaacggccacacgtgtggtc
ggctgtgtgcagttccacacggccaacgaggtcagccagtgccgcttcatgcacagccag
tttctgggaggcactatgatcatcattattggtggtataattgttgcttcagtgctggtg
ttcattatcatcctgatgatccgttacaaggcctacagcggcccagaggacagcaagacc
aaggtcagctccagcatgcactcgcagactaatggcagccagcagcggcttcagcgctcc
gcctccaagcaaccgtccgatgacggccagcgcgatgctcacgcacccaaagagtgcatg
gcgctggtgctgagggtggagaatgagaagaaggagaatccagcatccaccactgccatc
ctagaggtggagctgccgcccatgactgtagacaagatgaatagaaggaccagcctggat
gcacagcgctctggccccccatctgaggacacgcagacggacagtagcctgacgggctcc
accatgtccctgtgtctcataggccccaacgctggcaccaaggaggctcccaggctcaag
gacaagaaaaatgccctggccaacatgggattgctccctaatgagctggcacgaactagg
cacagattctcttttgacggaggggattactccatttttcagagtcatagttacccacgc
agagcgaggacgaggtggcacaagtccaccaaccagctcaacacggagtcttcgccgctc
gccaacaggagggttacgttcagcagcactgagtggatgcttgagagcacagtctga
DBGET
integrated database retrieval system
