Anoplopoma fimbria (sablefish): 129093526
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Entry
129093526 CDS
T09102
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afb03016
]
129093526 (trub1)
Enzymes [BR:
afb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
129093526 (trub1)
Transfer RNA biogenesis [BR:
afb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
129093526 (trub1)
Prokaryotic type
129093526 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
129093526
NCBI-ProteinID:
XP_054457544
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All DBs
Position
7:8326424..8334610
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AA seq
278 aa
AA seq
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MAGNIHNTAAPIASSVSKLQSLNGLFAIYKKRGPTSADVLNTLKEVLLKEAGVKNPNPRK
RRKQSLKMGHGGTLDSAASGVLVVGVGIGTKMLSTMLAGSKKYVAVGELGKATDTLDATG
SVILEKDFEHITRLDIEEKLKAFTGDIMQVPPLYSALKKDGQRLSVMLMKGHKVEAKPAR
PVTVYNLTLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELTRTKQGQFTLE
EHTLYEEQWTLEHVQRSLQPCSEPEQGVRRADPPEADT
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaacatacacaacactgcggctccgatagctagttctgtgtctaaactacag
tcgttaaatggactgtttgcgatatataaaaaacgagggccgacatctgcagacgtgtta
aatacactcaaagaagtgctactcaaagaagctggggtgaaaaacccgaacccgcgaaag
aggaggaagcagagcctgaagatggggcacggagggacgctggacagcgctgccagcggg
gttctggttgttggtgttgggattggcacaaagatgctcagtacgatgttggctggttct
aagaaatatgttgccgtgggggagctggggaaagcaacagatacccttgatgccactggc
agtgtgattctggagaaagactttgaacacataaccaggttggacatcgaggagaaactg
aaagctttcactggtgacatcatgcaagttcctccactctactctgcgctgaaaaaagac
ggccagcgtctgtccgtcatgctgatgaaaggtcacaaggtcgaggccaaacccgccaga
ccagtcaccgtgtacaacctgaccctgcaggagttcaagcctcctctcttcaccctggat
atagagtgtggtggtggattttacgtccgaagcttggtggatgatctgggaaaagctctg
tcatcgtgcgctcacgtgaaggaactgacccgcaccaagcagggccagttcaccctggag
gagcacaccttgtacgaggagcagtggacgctggaacacgtccagcgctctctgcagccc
tgctcggagccggagcagggggtgcgccgtgcggacccaccagaggctgacacctga
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