Anoplopoma fimbria (sablefish): 129093578
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Entry
129093578 CDS
T09102
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129093578
Membrane trafficking [BR:
afb04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
129093578
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_8
SH3_1
TPR_7
TPR_10
TPR_NPHP3
SH3_9
Motif
Other DBs
NCBI-GeneID:
129093578
NCBI-ProteinID:
XP_054457610
LinkDB
All DBs
Position
7:11681645..11702070
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AA seq
1324 aa
AA seq
DB search
MSARSDRDSGYRRKISTDGQQHRQVAEKSNRHSRIVRGFARDSSSLRRTVSTCEENVPTA
LPLLLDVVGGTERLPADEELQEMLRGKLRILQADSTEVNALFTELSTHLISINSEEKVIF
VTFKTFEEIWKFTTYYTIGFLGQCMENLLWDQKFWLSSLEDDIAIEVSLQEDTLNLIYKG
ILMQEGSFFASCSTNQMFDSSTSGGDLYLEQGDIAQFEPPFLGSGWTVLCLADGSRGTAP
TPGLEPVIPFHQWFLKSCAESILVGDGKPSCDFPLEFARGTCLATVEYDAEGPDELSMAP
GDRIIIVGLLVSCFDWFTGRKEATGEVGLVKTSLVKPSPDIYDSADIFLDGEEGTFFSLQ
EDKVIEETTALLKKKSQNDSGHNYKLDMISYQDSTKKTPLSSSSKGYPQQTDLKINIQRF
LDQGKDTLPPSVVTVNGTLEDSVLALEAKSPPCFTVHPVVEGNNNNEIFIPLFSFLEGQE
YKIEFGTLYGLSSELLASSIFTGHSDEDELIAFLGVARETARKKRLFWSQTRSCFLLGKL
CAGRSKFSQARVYFEEALSVPQEGFIDLRLLASIYSNLVAIYLLQKNTESFFALTERLVA
LLLGIPDCLEYLEDNSALKYILKKAVLSHNKMAEARACHLLAKHHWTRAEGVRVVPYLQR
LLVLCAEAQRTWGISPSHEYLALGRLYSELRLPHLSVSSARRAPQQPSATLTDCLSSMVL
LLDNVNTLNGITQQEASIPPQVAPYLQQALSSNKVQGVGSDQHHVLSHQLTLCLCQLFCK
HKMVGHAIGHMHILIDSNPPSQPSPISVPERNGTLIWLAWLHIDNKQPDVALDILDSVLA
SMPEHCTTPQEGVVLNMRGVALRCMGDLRRAAESYQAAVDICQEYEDMPNWAVAQANLGL
LCLKAGAKGLAQKHLTEAVQLFSELEEKGHEANFITVLLELGQHYVKQHQLDFGKGCYEW
ALLLAINANLLDCQLTATRHLCNLYGCESPDQAQCIIYSQHQVQLLRHTGDRRQEGDALE
AISQLYLTLGTERAYRAALDYTKTSLGIFIDLGCREKEAYGWLQAGKIYHLVDQTELVDL
YTQVAQDVALSTGDTGFILKLLEAAGDIFFNSSKDQDKAITFYRDRALPIAVKSSSVRSR
LRLCNKLTELMLSLKLYGEAVEFAQTALDISITLGDCLNERVAYHRLASLYHCLDQYELA
EHYYLKTLTLCPTPLLFDEETLYYVRVYQTLGDIIFYDLKDPFDAAGYYHLALAAAMDLG
NKRSQLQLCTRLATIYHNFLIDRELSLFFYQKARAFAAELNVRKINISPDQQYSSTSQSK
TNRQ
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctaggtcggaccgagacagcgggtaccggagaaagatctccacagacggccag
cagcaccggcaggtggcggagaaatcaaaccgacacagcagaatagtgcgtggtttcgcc
agagattcttcaagtctgaggagaactgtgtcaacatgtgaggaaaacgtcccaacagct
ctgccgctgctgctagatgtggtcgggggtacagagcgtcttcctgcagacgaggagttg
caggaaatgctaagagggaaactgcgcatcctgcaagctgacagcacagaggtcaacgct
ctgttcacggagctgtctactcatctcatctccatcaacagtgaagaaaaagttattttt
gtgacattcaaaacatttgaggaaatatggaagttcaccacatactacacaataggtttc
ttgggtcagtgcatggagaatctgttgtgggaccagaagttttggctcagctctttggag
gatgacattgcaatcgaggtttcccttcaggaggacactctcaaccttatctacaaaggc
atcctcatgcaggaaggttcattctttgctagttgtagtaccaaccagatgtttgacagc
tccacgtctggaggtgacctgtacctggagcagggggacatagcccagtttgagcctccc
ttccttggctcagggtggactgtcctctgcctggccgatggatcccgaggcactgcaccc
acaccaggtctcgagccggtcatcccttttcatcaatggttcctcaaatcctgtgcagag
agcattttagttggtgatgggaaaccctcctgtgacttccctctggagtttgccagagga
acctgtctggccacagtggagtatgatgctgagggcccagatgagctgagcatggcaccc
ggtgatcgcatcatcatcgtgggccttctggtgtcttgttttgattggttcactgggagg
aaggaggcgacaggagaagtgggtctggtcaagacaagcctggtgaaaccgagccctgac
atttacgactcagcagatatttttttggatggagaagaagggaccttcttcagtttgcaa
gaggacaaagtcatagaagaaacaactgccttattgaagaagaaatctcaaaatgattct
ggtcataactacaaacttgatatgatcagttaccaagactctacaaaaaagacaccatta
agttcttcgagcaaaggttatcctcagcagacagacttgaagataaatattcagaggttt
cttgatcaaggaaaagacacattgccaccttccgtagtgaccgtgaacgggactctagag
gactctgtcctggctttagaagcaaaaagtcctccctgtttcactgttcacccagttgta
gaaggaaacaacaacaatgaaatcttcattccgcttttctctttcttggagggacaagag
tacaaaatagagtttggcacactgtatggactgagttctgaactcctggcctcctccatc
ttcaccggtcactcagacgaggacgagctgattgccttcctgggtgtagccagagaaaca
gccaggaaaaagcgactcttttggtcacagacccgttcatgctttctgctgggtaagctc
tgtgccggaaggtcaaagttcagccaggcccgggtttactttgaggaagccctcagcgtg
ccacaagaaggcttcatcgacctcaggctgttggccagcatctactccaacctggttgcc
atatatcttttgcagaaaaacaccgaaagtttctttgctctgacagagcgacttgtagcc
ttgctattgggaatcccagactgcctggaatacttagaggacaactctgctcttaaatat
atcctcaagaaagctgttctgtctcacaacaagatggcagaggcccgggcttgtcatcta
ttggcaaagcaccactggactcgtgctgaaggggtacgagttgttccatatcttcagaga
ctacttgttctttgcgctgaagctcaaaggacatggggcatctctcccagtcatgagtac
ctcgccctgggtaggctctacagtgaactccgacttccccacctcagtgtcagttcagcc
aggagagctccgcagcagccctctgctacactgaccgactgcctgagcagcatggttcta
cttttggacaatgtcaacacactgaatggtatcacacaacaggaagcctccatcccacct
caagtggctccctatttacaacaagccctctcttctaacaaagtccaaggagtaggaagt
gatcagcaccatgttttgagccatcagcttaccctttgtctctgccaactcttttgcaag
cacaaaatggttggacacgctatcggccacatgcatattctaatcgacagcaatccaccc
tcgcagccatcccccatctcagtcccagaaagaaatggtaccctcatctggctggcatgg
cttcacattgacaacaagcagccggatgtggctctggatatcctggactctgtcctcgct
tccatgccagaacactgcactacccctcaggaaggtgtggtcctcaacatgcgtggcgtg
gcacttcgatgcatgggtgaccttcggagggcggcagagagctaccaggctgctgtggac
atctgccaagagtacgaggacatgccaaactgggctgtagctcaggctaacctggggctg
ttatgtttgaaggctggggctaaaggactagcccaaaaacacctgactgaggccgtgcag
cttttctctgagctggaagaaaaaggtcatgaggcgaacttcatcacagtgctgctggag
ctgggtcagcactatgtgaagcagcaccagctggactttgggaaaggatgctacgaatgg
gctctgttgctggctatcaatgctaatcttttagactgccagctcactgccaccagacac
ctgtgcaatctgtatgggtgtgagagtccggaccaggcccagtgtatcatctacagccag
caccaggtccagcttctgagacatacaggagacagaagacaggagggagatgcattggaa
gccatcagtcagctctacctcaccctgggcacagaaagggcatacagggcagctcttgac
tacaccaagaccagtctgggtattttcatcgacctgggctgcagggagaaggaggcgtac
ggctggttgcaagcgggaaagatctaccacctggtggaccagactgaactcgtggacctt
tacacacaggtagctcaggatgtcgctctgagtacaggagacacagggttcatcttgaag
ctcctggaagctgcaggagacattttcttcaacagcagcaaggaccaggacaaggctatc
accttctacagggaccgtgctctgcccatcgcagtgaagagcagcagtgtgcgttccagg
ctgaggttgtgcaataaattgactgaactgatgctaagtctcaagctgtatggggaagct
gtggaatttgctcagactgcactggacatcagtatcactctgggtgattgtctgaatgag
agggtggcttaccatcgtctggcctctctttaccactgtctggaccagtatgaactggct
gaacactattacctgaaaaccctgaccctctgtccaacacctctgctgtttgatgaggaa
acgctgtactatgttagggtgtaccagacgctgggggacatcatattctatgacctgaag
gacccatttgacgctgcaggctactaccaccttgctctggctgcagccatggatctgggc
aacaagaggtctcagctgcagctgtgcactcgtctcgccaccatctaccacaacttccta
atcgaccgggagctctctctcttcttttaccagaaagctcgtgcctttgctgcagagttg
aacgtgagaaagattaatatctcaccggatcagcagtatagcagcacctcgcagtccaag
acaaacagacaatag
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