Anoplopoma fimbria (sablefish): 129093753
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Entry
129093753 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04382
Cornified envelope formation
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04518
Integrin signaling
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129093753
04518 Integrin signaling
129093753
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129093753
09142 Cell motility
04820 Cytoskeleton in muscle cells
129093753
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129093753
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129093753
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129093753
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129093753
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129093753
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129093753
NCBI-ProteinID:
XP_054457843
LinkDB
All DBs
Position
7
Genome browser
AA seq
1693 aa
AA seq
DB search
MKLLICVITVALAVGSAHGGKKSDEPCGGRNCGEGCRCNPEKGSRGRPGPLGEVGQSGPE
GPRGTVGPTGPKGEKGHIGFKGPSGPKGDKGPMGVPGFTGTDGVPGHPGQDGGRGPSGLD
GCNGTRGESGSPGYGTGGPGIPGLSGPFGPKGQKGEPRYISDNGITSFPGLGGEDGRPGI
RGPDGPPGFPGPTGPEGFTGPPGPPGPPGPMGSQSDGYEGEKGDKGDVGLPGPSGTPGDG
SLRSEQTLTIYKGDKGEPGPKGIRGFTGLPGNPGPFGYPGEPGEKGILGYPGARGSPGFN
GPPGPPGQQGYSGSPGFQGPPGYTGPKGDQGNPGAPGPASYVSGPGTAVQGSTGDRGQSG
LPGPNGDQGFPGYPGQPGQPGVGGSGPSRQGFPGTIGPKGEKGNQGIPGYGFEGAPGEPG
LPGPRGSAGPQGPTSSPNGGTAAFNGQPGPTGPRGEPGERGYGGFRGDPGDCNCRGGGTS
GLPGLPGIPGVNGNPGFPGRKGELGDGGSPGFNGVQGPPGRGGDRGYFGRKGEKGTSSYS
NQGFGVKGELGSTGLRGPTGETGKSGRDGLPGFPGTPGPPGDGGYGTVGEKGFPGFPGPK
GRPASPRGEPGIGYPGIPGLRGGDGDPGIPGLPGPPGSAGPKGENSCEGVNDAGEGTGQV
LPCFIPGEGGDPGFPGLPGRPGIKGGPGFPGNTGRPGFDGAKGERGDSGFGGQPGPQGFP
GPRGDPGISGVPGQSFDGGRGNNGLPGRNGAKGQPGEVLGATPGSPGQNGLPGISGDKGQ
PGTPGGPGLPGSDARYGVPGLKGERGVDGLPGITGLPGLPSERTFGIPGRPGLPGSSGLS
GSPGFPGRKGERGDPGFPGPAGMKGTPGQPGFTGTPGPRGXPGPPGPGTRDGVPGIPGLK
GERGFAGLMGFPGRPGRPGNPGFPGAKGEAAGPGRDGLPGAPGFPGQKGERGYSGLPGLP
GPVVHQGFVAKGEPGVPGGSAFPGFPGPRGDKGFPGLPGRQGLPGLPGYAEQSKGQPGDN
GFPGRPGSPGFPGPKGEAGIVGFPGMSGPRGDDGSPGFPGNPGEYGRSGGKGAPGESYGY
PGSPGAKGQPGDSGYPGGRANDGAPGDNGFPGGPGFPGGKGSPGEGGRPGIMGSPGFPGQ
KGQPGYPGRRGLDGSPGLPAGPGSPGAKGLPGPPGLDGLNGLGGPKGLPGTPGGNAGGRP
GSPGSPGFKGERGVSFPGGPGYPGPKGERGDSGGSGRQGFPGVPGPPGPTLGSNVPGPTG
DPGLPGLDGEYGREGLPGPPGPPGPGTAQGDRGDSGLPGFPGSPGRKGDSGIPGGPGLPG
GSGFKGGRGEAGYNGGPGGKGYPGEPGYYGGKGPKGTQGNPGGRGAPGPMMAPPPFPPKV
NGDPGFPGAAGRPGVPGESGQTGIPGRSGPKGRPGPVGKLGRTGSPGFPGPIGEGGPPGF
PGPTGEQGPTGNTGRPGSPGGVGRSSSIGYTLVKHSQNSQVPMCPQGMAKLWDGYSLLFV
EGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWLSTTAPIPMMPVAE
LQIQPYISRCSVCEAPSLAVAVHSQDMSIPTCPPGWRSLWIGYSFLMHTAAGAEGGGQSL
VSPGSCLEDFRATPFIECNGAKGSCHYFANEYSFWLTTVEPSQEFVYAPAQETLKGGQER
SRVSRCQVCSKLL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcctgatctgtgtgataacagtcgccttggcggtgggatctgcgcacggaggt
aagaagtctgatgagccatgtgggggcagaaactgtggcgaaggatgcaggtgcaaccca
gagaaaggcagcaggggtcgtccggggcctctcggcgaggttggtcagagtggaccggag
gggccacgtgggactgtggggccaacggggcctaaaggagagaagggccacattggattt
aaaggaccatccggccccaaaggagacaaggggccgatgggagtgccggggttcacaggg
actgatggagtacctggtcaccctggtcaggacggtggacgtggaccttcaggactggac
ggatgtaacgggaccagaggagaatctggatcgcccggctacgggaccggaggacctgga
atacctggactctctgggccttttgggccaaagggtcagaaaggagagcctcgatacatc
tcagataacggcatcacgagttttccaggtttaggcggagaagacggtcgacctggtatc
agaggtcctgatggtccacctggttttcccggtccgacgggtcctgagggattcaccggc
ccacctggtcctcccggtcctccagggccaatggggagccagagtgacggatatgaagga
gagaaaggagacaagggcgacgtgggtcttcccggacctagtggtacccccggcgacggg
tcgctcagaagcgaacaaactctcactatctacaaaggagataagggtgagcccggacca
aaggggatcagagggttcaccggccttcctggcaatcctggacctttcggctatcctggt
gaacccggagagaagggcattcttggataccccggggcaagaggttctcctggtttcaac
gggcctcccggtcctccaggacaacagggatacagcggttctccaggtttccaggggcca
ccaggatacactggaccaaagggagaccagggcaaccccggagcaccaggacctgcttct
tacgttagcggtccaggaactgctgttcaagggtcaacaggtgaccggggtcaaagcggc
ctgcccggtcccaacggtgaccagggctttccaggatacccaggacaaccaggccagcca
ggagtcggtggttctggtccaagtcgccaaggtttccccgggaccatcggcccgaaggga
gagaaaggtaaccaagggataccaggctacggtttcgaaggagcccccggtgaacctgga
ctccccggaccccgcggatctgctggacctcagggccctacgagttctccaaacggtggc
accgcagctttcaatggacagcctgggcctactggccccagaggagagcctggtgaaaga
ggatacggtggtttcagaggtgatcctggcgactgtaactgccgtggaggaggcacttca
gggttgcctgggttacctggaatcccaggagtcaacggcaaccccggcttccctggacga
aagggggagcttggcgacggcggctctcctggctttaacggcgttcagggacctcctggt
cgtggtggtgaccgaggttactttggtcgtaagggagagaaggggacgtcttcgtacagc
aaccagggtttcggggtaaaaggagagctcggatccaccggactcagaggacctactgga
gaaactggaaaatctggcagagacggacttcctggcttccccggaacccctggaccacca
ggcgacggcggctacggcacagttggagagaaaggtttcccagggttcccggggcctaag
ggtcgacccgccagcccccgaggcgagcccggcatcggctacccggggatacccggcctt
cgtggaggggatggcgaccccggtattcctgggttgccggggccacctggttctgctgga
ccgaaaggtgaaaacagctgtgaaggggttaatgacgccggagagggaacgggccaagtg
ctaccttgcttcatacccggtgagggaggagaccccggtttccccggtttacctggacga
ccaggtatcaaaggtgggccaggtttcccaggaaacactggacgtcccgggttcgacggt
gccaaaggagagagaggagactccggttttggaggccaacctggaccacaaggtttccct
ggacccagaggggatcctggaatttcaggtgttccaggacagagttttgacggaggcaga
gggaataacggtcttccagggcgtaatggggccaaaggtcaaccaggagaggtactggga
gccacacctggtagtcctggacagaacggtttaccaggaatctctggagataagggccaa
cccgggacgccaggaggacctggattacctggttctgacgcacgctacggtgttccgggt
ctgaagggagagcgcggcgttgacggtcttcctggtatcaccggccttcccggacttcca
agtgagcggacttttggcattcctggtcggcctggacttcctggcagcagcggactgagc
ggatcaccaggtttccccggtcgtaagggagaaagaggagacccaggtttcccaggtccg
gctggaatgaagggaacccctggacagcccggctttactggaaccccggggccaagggga
ncccctggacctccaggaccaggaactagagatggagttccaggaatcccgggactgaag
ggtgaaagaggttttgcaggactgatgggtttccctggtcgacctggtcgtcctggaaac
ccagggtttcctggagcgaaaggagaggctgcaggacccggaagagacggactccccggc
gctcccggattccccggacagaaaggtgagagaggatacagcggtctccccggcttgccc
ggtcctgttgtccatcaagggtttgtggcgaaaggagaacccggagtacctggaggcagc
gccttccctggcttccccggacccagaggtgacaagggttttccaggtctgcctggtcgt
cagggtctacctggacttcctggttatgctgagcagagtaaagggcagcccggagataat
ggtttccccgggcgaccgggatcgccaggtttccccggaccgaagggagaagctggaatc
gtgggattccccggcatgtctggaccacggggtgatgacggttcacctggtttccctggc
aaccctggagaatacggtcggtccggtggcaaaggtgcacccggagaaagttacggttat
cccggaagtccaggagctaaaggccagccaggagattcaggctacccaggtggccgcgcc
aacgacggcgcccccggcgacaacggcttcccgggaggtccaggtttccccggagggaag
ggatctcctggtgaaggaggacggcctggaataatgggctcccctggtttccccgggcag
aagggccagcccggatacccaggaagaagaggactagatgggtctcctggtctgcctgca
ggtcctggaagtcctggagccaaaggtttacccggacctcctggtttggacggacttaat
ggccttggtggacctaaaggcctccctggaaccccaggtgggaatgcaggaggtcgtcca
ggttctcctggtagtccagggtttaagggggagagaggcgtctctttcccaggaggtcca
ggctaccccggaccgaagggagagagaggagactcaggtggttctggacgccaggggttc
ccaggtgtgcccggacctcctggtcccactctggggtcaaatgttcctgggcctacagga
gaccccggtctccctggactggatggagagtatggtcgtgaaggtcttccaggtcctccc
ggcccgcccggtccaggcacagcccagggagacaggggggactctgggctcccgggcttc
cccggctcccccggcaggaaaggagactcaggaatccccggaggccccggactccccggc
ggctccggtttcaaaggaggacgaggtgaggccggctacaacggaggtcctggtggcaag
ggttaccccggtgaacctggttactacggaggcaaaggacccaagggaacacaaggtaat
ccgggtggtaggggagcccctgggcccatgatggcaccgccacccttcccgccgaaggtc
aacggagatcctggtttccccggtgcagctggcaggcccggtgtccccggagaatctggt
cagactggaatacctggacgttcaggtcctaagggtcgtcccggtcctgtgggtaaactg
ggccggaccggatctcctggttttcccggacccatcggcgaaggcggaccccccggtttc
cccggaccgactggagaacaaggtcccaccggtaacaccggtcgtcccggctctcccggt
ggcgtcggccgcagttccagcatcggctacactctggtgaagcacagccagaactcccag
gtccccatgtgtcctcagggcatggccaagctgtgggacggctacagtctgctgtttgtg
gagggacaggagaaggcacacaaccaggacctcggtcagcccgggtcatgcctccccagg
ttcagcaccatccccttcctctactgctcccccaacgaggtctgctactacgccagccgc
aacgacaaatcctactggctctccacaaccgcgcccatacccatgatgcccgtggccgag
ctgcagatacaaccttacatcagcaggtgttctgtgtgtgaggctccgtctctggcggtg
gcggtccacagtcaggacatgagcatccccacctgtcctcccggctggaggagtctgtgg
ataggatactccttcctcatgcacacggcagccggcgctgagggcggcggtcagtcgctg
gtgtctcccggctcctgcctggaggatttccgtgcgacgccgttcatcgagtgcaacggg
gccaagggcagctgccactacttcgccaacgagtacagcttctggctcaccaccgtggag
cccagccaggagttcgtctacgcaccggcgcaggagaccctgaagggaggccaggagcgc
tccagagtcagccgctgccaagtctgcagcaagctcttgtag
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