Anoplopoma fimbria (sablefish): 129094116
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Entry
129094116 CDS
T09102
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129094116 (ptbp1b)
03041 Spliceosome [BR:
afb03041
]
129094116 (ptbp1b)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
129094116 (ptbp1b)
Spliceosome [BR:
afb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
129094116 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
129094116
NCBI-ProteinID:
XP_054458127
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All DBs
Position
8:complement(28691612..28709066)
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AA seq
537 aa
AA seq
DB search
MEPVALRSSVLCNGRRGSEELFPSITSGPYIMSTTANGNDSKKFKGDTRGPGVPSRVLHI
RKLPNDIAEAEVISLGLPFGDITNLLMLKAKNQAFLEMNSEEAAQNMVGYYSTNMPIIRN
QLVYVQFSNHKELKTDNSPNQERAQAALRALTSCHVDPTMAAPSTVLRVVVENLVYPVTL
DALCQIFSKFGTVLRIIVFTKNSQFQALMQYADGASAQSAKLSLDGQNIYNGCCTLRVSF
SKLTSLNVKYNNEKSRDFTRPDLPTGDSQPSMEHQAMATAFTPGIISAGPYGATHAFPPA
FTLQPTMSSHYPGLVPALPGALASLALPGASRMGFHHLSAGVSVLLVSNLNPERVTPHCL
FVLFGVYGDVMRVKILFNKKENALVQMSDCTQAQLAMSHLSGQQLHGKPLRITPSKHTSV
QLPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLKMLF
SSSGAMVKAFKFFQKDHKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSSI
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgttgctctccgtagttccgtgttgtgcaatggacggagaggatctgaagag
cttttccccagcatcaccagtggcccgtatatcatgagcaccacagccaatggaaacgac
agtaagaagttcaaaggtgacaccagaggtcccggggtgccgtccagggttctccacatc
cgcaagctccccaacgacatcgcagaggccgaggtcatcagcctcggtctgccgttcgga
gacatcaccaacttgctgatgctcaaagccaaaaaccaggccttcttggagatgaactcg
gaggaagcagctcagaacatggtgggttattactccacaaatatgcccatcatcaggaac
cagctggtctacgtccagttctccaaccataaggagctcaagaccgacaactcccccaac
caggagagggcccaggcagctcttcgggccctcacttcctgtcatgtggatccaactatg
gcagctccgagcaccgtgctgagggtggtggtggagaacctggtctaccccgtcaccctg
gacgcgctctgccagatcttctcaaagttcggcaccgtgctgaggatcatcgtcttcact
aagaacagtcagttccaggctctgatgcagtacgcagacggagcctccgcccagtcagct
aaactgtctctggacggacagaacatctataacggctgctgcactctgagggtcagcttc
tctaaactcaccagcctcaacgtgaagtacaacaacgagaagagccgagacttcaccaga
ccggacctcccaaccggagacagccagccgagtatggagcaccaggccatggccaccgcc
ttcactccagggatcatctcagccggaccgtacggagccacacacgccttcccccccgcc
ttcaccctccaacccaccatgtcctcccactacccaggcctggtccctgctctgcccggg
gccctggcctcgctggccctccccggggcctccagaatggggttccaccacctctcagcc
ggagtctctgtcctgctggtcagcaacctgaaccctgagagagttacgccccactgcctc
tttgttctcttcggtgtttatggcgacgtgatgagagtgaagatcctgttcaacaagaag
gagaacgctctggttcagatgtcggactgcacacaggctcagctagccatgagccacctg
agcggccagcagcttcatgggaagcctctgcgcatcacgccgtccaaacacaccagcgtc
cagcttccccgtgaaggccacgaggaccagggcctgaccaaagactacagcaactccccc
ctgcaccgcttcaagaagcccggctccaaaaactactccaacatcttcccaccttctgcc
accttgcacctgtccaacatcccaccgtctgtggttgaggacgacctcaagatgctgttt
tccagctcaggagccatggtcaaggccttcaagttcttccagaaggaccacaagatggct
ctgatccagatgggctcagtggaggaggccatcgagtccctcatcgagttccacaaccac
gacctgggagagaaccaccacctgcgggtctccttctccaagtcctccatctga
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