Anoplopoma fimbria (sablefish): 129094184
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Entry
129094184 CDS
T09102
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129094184 (upf1)
03015 mRNA surveillance pathway
129094184 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129094184 (upf1)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129094184 (upf1)
5.6.2.5 RNA 5'-3' helicase
129094184 (upf1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129094184 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129094184 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
129094184
NCBI-ProteinID:
XP_054458230
LinkDB
All DBs
Position
8:complement(13511725..13529034)
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLLNGGLDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPMWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMS
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggag
acggagctgctcggagccgacacgcagggctccgagtacgacttcaccgacttcaccctc
cccagccagacgcagactcaaggccagacccagagccagctggacagccaggtaaatggt
cctgatgagggtctgctcaacggggggttggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggatgaggaggacacgtactacaccaaagacctgcct
ctgcacgcatgcagctactgcggtattcacgatccagcatgtgtggtgtactgcaacacg
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaagtgacgctgcataaggatgggccgctgggcgagacg
gtgctggagtgttacaactgtggctgtcgcaacgtcttcctcctgggcttcatcccggct
aaggccgattccgtggtggtgctactctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggatagctcgcagtggcaaccacttatccaggaccgctgctttctg
tcctggttggtgaagatcccatcggagcaggagcagcttcgggcccgtcagattaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccctggaagac
ctggagaaacctggagtggacgaggagccccagcatgtgctgctgcgctatgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatattacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctcatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggccccgatgtggaaaggcataggt
catgtcatcaaagtccccgacaactatggggatgaaattgccattgagttgcgaagcagt
gttggagcacctgtggaaatcccccacaacttccaggttgactttgtgtggaaatccaca
tcctttgacaggatgcagagtgccctgaagacttttgcggtggacgagacctcggtgtct
gggtatatttaccataaactgctgggccacgaggtagaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacaggtgtacgct
gtgaagacggtgctgcagaggcctctgagtctgatccaaggtcctcctggcactgggaag
acagtcacctctgccactatcgtctaccacttgtcccgacaaggcaacggaccggttctg
gtgtgtgctccaagtaacatcgccgtggatcagttgacggagaagattgacaagactgga
ctgaaggtcgtcaggctttgtgctaagagccgggaagccatcgagtctccagtatccttc
ctcgctctgcacaaccagatcagcaacatggacagtatgccagagcttcagaagctacag
cagctgaaggatgagaccggtgagctgtcatctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaatgctgatgttatctgctgtacctgtgtc
ggggctggagatcctcgtttggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccaccgagccagagtgtatggtgcctgtggtgcttggagccaagcagctaatt
ctggtgggtgatcactgccagctcggtcctgtggtgatgtgtaagaaagcagccaaggca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctatgag
ggctctctgcagaatggtgtcactgcagctgatcgcatcaagaaaggctttgacttccag
tggccgcagccagacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctctggaacctcctaccttaacaggacggaggctgcaaacgtagagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccagatcggcatcatcaccccgtacgagggt
cagcgatcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagcgtggacgcctttcagggcagagagaaggactttatcatc
ctttcttgtgttcgtgccaatgagcaccagggcatcggctttctgaatgacccgcgtcgt
ctcaacgtggcgctgaccagagccaagtacggcgtgatcattgtgggaaaccccaaggct
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggaacagaaagtcctc
gtggagggtcccctgaacaacctgagggagagcctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaaccctgggggacgttttatgagcactgcgatgtacgatgcccgt
gaggccctcatccctggctccgcctacgaccgcagcaacgctgccggacgtccgtccaac
atgtacttccaaacacacgaccagattggcatgattggggcaggccccggtcatatgtcc
gctatgaatattcccattcccttcaacctggtgatgccaccaatgcctccccccagctac
ctgggccagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgt
ggcgggcggcagagggtccgaggatcagcacaccagggtgccagtcagggtaacggacca
aacagccaggccagccaagacggggcctcccagcccttctcccaggggccgctgacacag
ggctacatctccatgagccagccttcccagatgagccagcctggcctctcccagcccgag
ctgtcccaggacagctacctgggcgatgagttcaagtcccaaatcgacgttgctttgtcc
caggattcgacttaccagggtgaacgtgcataccagcatggtggggtgactggactgtca
cagtactaa
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integrated database retrieval system
