Anoplopoma fimbria (sablefish): 129094317
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Entry
129094317 CDS
T09102
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129094317 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129094317 (prpf38a)
Spliceosome [BR:
afb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129094317 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
129094317 (prpf38a)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
SOG2
Motif
Other DBs
NCBI-GeneID:
129094317
NCBI-ProteinID:
XP_054458412
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All DBs
Position
8:5504435..5508967
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AA seq
311 aa
AA seq
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MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV
FGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAVDCYKYL
EPLYNDYRKVKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRHVLEEAEMLDPR
ISALEEDLDEVESSEEEDEEEEKPERIQTPEPHRRRDGYRDNDRPRRSPSPRYRRSRSPR
RRSRSPKRRSPSPRRDRHRSKSPRRHRSRSRDRRHRSKSPGHHRSHRHRSHSKSPERSSK
KSHKKSRRGNE
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacagaactgtcaaagatgcgaacagtatccacgggaccaacccgcagtatctg
gtggagaaaatcatccggacccgaatctacgagtcgaagtactggaaggaggagtgcttt
ggtctgaccgctgagctggtcgttgacaaagctatggagctgaagtacgtcggtggagtt
tttggaggaaacataaagcccactcccttcctctgcctcacgctgaagatgctgcagatt
caaccggaaaaagacatcatcgttgagttcatcaaaaatgaggatttcaaatatgttcgt
ttacttggagcgatgtacatgaggttaactggcactgcagtggattgctacaagtacctg
gagccgctgtacaacgattacagaaaagtcaagagtcagaaccgaaacggagagtttgag
ttgatgcacgtggacgagttcattgacgagcttcttcacgcagaaaggatgtgtgacatc
attttgccccgacttcagaaaagacacgtcctcgaggaggctgagatgttagatccacgt
attagcgctctggaggaagatctggatgaggtggagagcagcgaagaagaagatgaggaa
gaggagaagccggagagaatccagacccctgagccccacagacggcgtgatggttaccgt
gacaacgacaggcctcgtcgctctccatcgcctcgttacagacgcagccgctcacccaga
cggagaagcagatctccaaagaggcgaagcccatcgccccggagagaccgccatcgcagc
aagagcccccgccgccaccgcagccggtccagagacagacgccaccgctccaaatctcca
ggtcaccacagaagccacagacatcgcagccactcaaagtccccagagaggagttccaaa
aagagtcacaagaagagtcgacgaggaaacgagtga
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