Anoplopoma fimbria (sablefish): 129094355
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Entry
129094355 CDS
T09102
Symbol
nectin1b
Name
(RefSeq) LOW QUALITY PROTEIN: nectin cell adhesion molecule 1b
KO
K06081
poliovirus receptor-related protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03266
Virion - Herpesvirus
afb04514
Cell adhesion molecule (CAM) interaction
afb04517
IgSF CAM signaling
afb04520
Adherens junction
afb05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
129094355 (nectin1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129094355 (nectin1b)
04517 IgSF CAM signaling
129094355 (nectin1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
129094355 (nectin1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129094355 (nectin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129094355 (nectin1b)
04090 CD molecules [BR:
afb04090
]
129094355 (nectin1b)
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
Nectin family
129094355 (nectin1b)
CD molecules [BR:
afb04090
]
Proteins
129094355 (nectin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
Ig_3
V-set
Ig_2
ig
I-set
Ig_PVRIG
Trp_oprn_chp
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
129094355
NCBI-ProteinID:
XP_054458468
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All DBs
Position
1:26693462..26765857
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AA seq
499 aa
AA seq
DB search
MAMCAGIWMLLLSLHVQAGNGQMVQMDSIKSGFVGSQVELRCIFINSNPPVKISQVTWQK
LLNGTKQNVAIANPALGVSVLPPFKERVTFKQAAVRHRTPSLEDTTIVFSSLQLSDEAAY
ICEYTTFPAGNRENMVNLTVYARPMTRMTLTTPTIVARASKRKMTVATCLSANGKPPSVI
KWDTRLKGEATFQEIRNQNGTVTVRSNYVVVPSRETHKQKLTCIVTYRDERITDSVVLNV
QYEPQVKIEGFDGNWFLNRQNVQLTCRADANPPVTIYQWKLLNGSLPNNVEIRNNTLFFK
GPVTYDLAGTYVCDATNGIGTHTGIVDVNITEFPNNSYTEGDEIPKEQHNAGAAIGGAVV
GVALLGLAAILLFVFLRRRQRTFKGDYSTKKHVFGNGYSKAGGLPAHPPIPKNLQYPDDS
DDEKKPAQIGGPXGFEASERDFDGEQEDLKRPYFTVDXGESRDYDERTLAFQYDPEPEIA
DDMISQTDGSVISKKEWYV
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtgtgcggggatatggatgctcctgctgagcctgcacgtccaagctggaaac
gggcagatggtgcagatggactccatcaagtccggcttcgtgggctcacaagtggagctg
cgctgcatcttcatcaacagcaacccgccggttaagatctcccaagtcacctggcagaag
ctcctcaacggcaccaagcagaacgtggccatagccaacccggccctcggcgtgtccgtc
ctgccgcccttcaaggagcgcgtcaccttcaagcaggcggcggtccgccaccgcacgccc
tccctggaggacaccaccatcgtgttctccagcctgcagctgtccgacgaggctgcgtac
atctgcgagtataccacgtttcctgcaggaaaccgggagaacatggtcaacctgactgta
tatgctcggcctatgacacgcatgaccttgacaacgcccacgatcgtggccagggcctcc
aaacgcaagatgaccgttgcaacttgcctgtcagccaacgggaagcccccgagcgtgatc
aaatgggacaccaggttgaagggcgaagccaccttccaggagatacgcaaccaaaacggg
acggtgacggtacggagcaactacgtggtggtgccgagccgcgagacccacaagcagaag
ctcacgtgcatcgtgacgtaccgggatgaaaggatcacagacagcgtggtgcttaacgtg
cagtatgaacctcaggtgaagatcgagggctttgatggaaactggttcctgaaccgtcag
aatgttcagctgacctgcagggctgatgccaacccccctgtcaccatctaccagtggaaa
ctcttgaacggctccctgcccaacaatgtggagatcaggaacaacaccctgttcttcaag
gggccggtgacctacgacctggccggcacttacgtctgcgacgcgaccaacggcatcggg
acccacaccggcatcgtggacgtcaacatcacagaattccctaacaactcgtacactgaa
ggcgatgagatcccgaaggagcagcacaatgcaggtgccgccatcgggggcgctgtggtg
ggagtggccctgttgggcttggcggccatactgctcttcgtattcctgcgccgccgccag
cgcaccttcaagggggactacagcaccaagaaacacgtgttcggtaacgggtacagcaag
gctggcggcctgcccgcccacccgcccatccccaagaacctccagtacccggacgactcg
gacgacgagaagaagccagcccagatcggcggccccngggggttcgaggcgagcgagcgc
gattttgacggggagcaagaggacctgaagaggccctatttcactgtggacngaggggag
agccgagattatgacgagcggactctggctttccagtatgaccctgaacctgagatagcc
gacgatatgatctctcaaaccgacggctctgtcatttctaagaaagagtggtacgtgtag
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