Anoplopoma fimbria (sablefish): 129094441
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Entry
129094441 CDS
T09102
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04010
MAPK signaling pathway
afb04020
Calcium signaling pathway
afb04144
Endocytosis
afb04510
Focal adhesion
afb04540
Gap junction
afb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129094441 (pdgfra)
04020 Calcium signaling pathway
129094441 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129094441 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
129094441 (pdgfra)
04540 Gap junction
129094441 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
129094441 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
afb01001
]
129094441 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
afb04090
]
129094441 (pdgfra)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
129094441 (pdgfra)
Protein kinases [BR:
afb01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
129094441 (pdgfra)
CD molecules [BR:
afb04090
]
Proteins
129094441 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Kinase-like
Motif
Other DBs
NCBI-GeneID:
129094441
NCBI-ProteinID:
XP_054458592
LinkDB
All DBs
Position
8:complement(26344300..26366750)
Genome browser
AA seq
1457 aa
AA seq
DB search
MDGVKTCVVFGGFLVVLVSVASSLSPPTIVSNEEEFILRPNSVFNISCTGKKNVIWAEPL
PENTFVYPGYYTATLFIYNATVENTDYYMCTYEFQEGEPEEENEAGIYVFVPDPQVPFVP
ETPENLVVPMENMGVPITCRVSNPYSHVILRSIASGEEMSALYDNKMGFFGNLSPGQYRC
ETVVNGQTMTSAIYTVVNEEDFDVKVKASVETVRAGQPFNITCVAPTGLNFHQQWLHPKK
QAVDAVQMKQTFPDRVVYTLSIPQATSQDSGVYECSVAEETSGEVRAGSVAVTVFEENSF
VALDHGGLQATEFISLLEETEFIVLINADPAPKVTWMKDGKDLSQSFYVLTKTSHVNGNW
YESVLTLRQPLVKDDGNYTITALSGSRTAQFSFTVKVKAPTAMMFPPSSAPVLLPQVEEL
VVPLHTAFTLTCSGEAKLGWMTPLDAHEETREDNSGLFVTSVTVENATATHTGYYTCFYS
RNTTEDVEDSSIYIYVPDPDVPFVPLLVPYGNHFLFDHEDMEIQCRVSDPSANVTLVNVD
TQQPVTSVYDSKRGALGVFTAGTYVCKALVNGEEHYSGEYIVHGWAGGSLHVELMAQRSA
LLLGDTIVVTCLARGSEILEDHWKYPGKLANRGIKTVQENKKDQEIRYTLTIPQASDKDS
GIYSCSITDIMSNESQTKELVIRIFAREIMSVRPEFGEYESAELDEVREFKAEISSFPSA
HVTWLKDGVPLSDVTAEISTSLRQLSETSYSSVLTLIRAKEEDSGNYTMRVENGDYRRDV
ELILEVKVPAVIVDLMDIHHGSATGQSVVCITRGQPTPVVEWFVCKNIKHCANDSSAWVP
LPANSTEVTMDSHFDEDNNLESQVMFGHLESTLAVRCLARNEMAAVSREVKLVSNGPHPE
LTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVDPMQLPYDS
RWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSE
LKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRETFLSLNPEKSKKE
LDIFGINPADESSRSYVILSFESKQDYMDMKQADTQYVPMLEMSSPSKYSDIQTSEYDHP
PSQKEDEMDDLLSEDMNEGLSTTDLLSFTYQVAKGMEFLASKNCVHRDLAARNVLLSQGK
IVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVWSYGILLWEIFS
LGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPDDVYEMMMKCWNSEQEKRPTFLGLSESV
SSLLPSSYKRHYERVNHQFLKSDHPAVTRVCVENDDAYIGIAYKNPSKLKDRESGFDEQR
LSSDSGYIIPLPDLDPVSDDEYGKRNRHGSQTSEESAIETGSSSSTYAKREGETLEDITL
LDEMCLDCSDLGEDSFL
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggatggggtgaagacgtgcgtggtcttcgggggtttcctggtggtgctggtttcagtt
gcttccagtctgtcgccacctaccatcgtgtccaacgaagaagagttcatcctccggccc
aactccgtgttcaacatcagctgcaccggtaaaaagaacgtcatctgggccgaaccgctg
ccggaaaacaccttcgtgtaccccggatactacaccgccacgcttttcatttacaacgcc
accgtggaaaacaccgactactacatgtgcacctatgagttccaggagggcgaaccagaa
gaagaaaacgaggcgggaatttacgtcttcgtcccagatcctcaggttcctttcgtccca
gagacccccgaaaacttggtagtccccatggagaatatgggggtccccatcacctgccga
gtgtccaacccttactctcacgtcatcctgaggagcatcgccagtggagaggagatgtcc
gccctctacgacaacaagatgggcttctttggaaacctgtcgccggggcagtaccggtgt
gaaaccgtggtgaacggccagacgatgaccagcgccatttacaccgtggtgaacgaggag
gattttgacgtgaaggtgaaagccagtgtggagacggtgcgagccgggcagcccttcaac
atcacatgtgtcgctcccaccggactgaacttccatcagcagtggctgcatccgaaaaaa
caggcggtggatgcagttcagatgaagcagacttttcccgatcgggtcgtctacaccctc
agcatcccacaagccacctctcaggacagcggcgtctacgagtgctccgtcgccgaggag
acgagcggggaggtcagagccggaagcgtggcggtcaccgtcttcgaggagaattccttc
gtcgctctggaccacggtgggcttcaggccacggagttcatcagcctcttagaggagacg
gagttcatcgtcctcatcaatgccgacccggctcccaaagtcacctggatgaaggacggc
aaagacttgtcacagagcttctacgtcctcaccaagactagccacgtgaacgggaactgg
tatgaaagcgttctgacattacgacagcctctggtgaaagacgacgggaattacaccatc
acggccctcagcggctctcgcactgctcagttctccttcacagtcaaagtgaaagccccc
actgctatgatgttccctccatcctccgcccccgtgctgctgccacaggtggaggagctg
gtggtgcccctccacactgctttcaccttgacctgtagcggagaggccaaactcggctgg
atgacgccgctcgacgcgcacgaggaaacgcgggaggacaacagcggcctgttcgtcacc
tccgtcaccgtggagaacgccacggcgacgcacaccggctactacacctgcttctacagc
cggaacaccacggaggacgtggaggacagcagcatctacatctatgtgccagatccagat
gttccctttgtgccgttgctggtgccttatggcaaccacttcctgtttgaccacgaggat
atggagatccagtgtcgggtgtccgatcccagtgctaacgtgacactggttaatgtcgac
acccagcagcctgttaccagcgtctacgacagcaagaggggcgctctgggagttttcacc
gctggaacctacgtctgcaaggctctcgttaacggagaggaacactacagcggggaatac
atcgtccacggctgggcaggtggctctctgcatgttgagctgatggcacaacggtccgct
ctgctgttgggagacaccatcgtcgtcacctgtctggctcggggatctgagattctggag
gaccactggaaataccctggaaaactggctaatcgtgggatcaaaacagtgcaagagaac
aagaaggatcaggagatccgctacactctgaccatcccacaggcctcagacaaagacagc
ggcatctactcgtgctccatcaccgacatcatgagcaacgagagccagacaaaggagctg
gtcattcgaatttttgcgcgggagatcatgtccgtccggcccgagtttggagaatatgaa
tcggcggagctggatgaggttcgagagttcaaggctgaaatcagctccttccccagcgct
cacgtcacttggctcaaagacggcgtcccgctcagcgacgtgacggcggagatctccacc
agcctccggcagctcagcgagaccagctactcgagtgttctcaccctgatccgagccaaa
gaggaggacagcgggaactacaccatgcgggtggagaacggagactacagacgtgatgtt
gagttgatcctggaggtcaaagtgcctgcagtcattgtggacctgatggacatccaccac
ggctcagccaccggccagtctgtggtgtgcatcaccagagggcagcccactccggtggtg
gagtggttcgtctgcaagaacatcaaacattgtgccaacgactcgtccgcctgggtgccg
ctccccgccaactccacggaggtcaccatggactcgcacttcgacgaggataacaacctg
gagagccaggtcatgtttggtcacctggagagcacgctggcggtgcgctgcctggccagg
aacgagatggccgccgtcagcagggaggtcaaactggtgtccaacggccctcacccagag
ctgactgtagctgctgctgtgctggtgctgctggtcattgtcatcatctcactcattgtc
ttggttattatctggaaacagaaaccacgctacgagatccgctggagggtcatagagtcc
gtgagtccggacggccacgagtacatctacgtggacccaatgcagcttccctacgactcc
agatgggagttcccccgagacagacttgtgctcggtcgtatcctgggctccggagccttt
gggaaggtggtggagggcaccgcgtacggactcagccgctcccaacccgtcatgaaggtg
gcagtgaagatgttgaaacccacggcccgctccagcgagaagcaggccctgatgtccgaa
ctgaagatcatgactcatcttggaccacatctcaacatcgtgaacctcctgggagcgtgc
accaaatcaggcccgatctacatcatcacagagtactgtttctatggcgatctggtcaac
tacctccacaagaacagggagacattcctcagcctgaacccagagaagagcaagaaagag
ctggatatcttcgggatcaaccctgcggatgagagcagcaggagttatgtgatcctgtcc
ttcgagagcaaacaagactacatggacatgaagcaggccgacactcagtacgtccccatg
ctggagatgagcagtccctccaagtactctgacatccagacgtctgagtacgaccacccg
ccctctcagaaagaggacgagatggacgacctgctgtcagaggacatgaacgagggcctc
agcaccaccgatctgctcagtttcacctaccaggtggccaaaggaatggagttcctggct
tccaagaattgtgttcatcgggacctcgccgccaggaacgtcctcctctctcagggcaag
atagtgaagatctgcgacttcggactggcccgagacatcatgcacgacaacaactacgtc
tccaaagggagtactttcctgccagtgaagtggatggcgccagagagtatttttgacaac
atgtacaccactctgagtgacgtctggtcgtacggcatcctgctctgggagatattctcc
ttaggtggaaccccatacccgggcatggtcgtggattcaagcttctacaacaagatcaag
agcggatacaggatggccaagccggagcatgcgcctgatgacgtgtatgagatgatgatg
aagtgctggaacagcgagcaggagaagaggcctacgttcctgggtctgagtgaatctgtt
tcttctctgctgccctccagctacaagaggcattacgagagggtgaaccaccagttcctg
aagagcgaccacccggctgtgacccgggtgtgcgtggagaacgacgacgcctacatcggc
atcgcctacaagaacccgagcaagctgaaggaccgggagagcggcttcgacgagcagcgg
ctgagctccgacagcggatacatcatccccctcccagacctggaccccgtctctgacgac
gagtatggaaagaggaaccgacacggatctcagacgtccgaggagagcgccatcgagacg
ggctccagcagctccacctatgcaaagcgcgagggtgagactctggaggacatcacgctg
ctggacgagatgtgtctggactgcagtgacctgggggaggacagcttcctgtga
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integrated database retrieval system
