Anoplopoma fimbria (sablefish): 129094642
Help
Entry
129094642 CDS
T09102
Symbol
col15a1b
Name
(RefSeq) collagen, type XV, alpha 1b
KO
K08135
collagen type XV alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afb00535
]
129094642 (col15a1b)
Proteoglycans [BR:
afb00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
129094642 (col15a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
bCoV_NSP3_N
Motif
Other DBs
NCBI-GeneID:
129094642
NCBI-ProteinID:
XP_054458873
LinkDB
All DBs
Position
8:complement(4894184..4928504)
Genome browser
AA seq
1450 aa
AA seq
DB search
MGAPHLSLALFLLLSSPVRAQWWSYFWANPQTSSSSPPPPSIPPSIPSPSITTLGTSDTP
GPTQWVVVTDEGVTEKAPEGSTLTEGSVLAPTPSPGLSIFGRSTAEPGPLHPEENAGGGS
KAKAQYKTLKHWKSERGSGGHLDLTELIGVPLPPSVSFTPGYEGFPAYNFGPNANIGRLT
KTFVPGSFYRDFAIIVTVRPSTQRGGVLFAITDARQKLVELGLALTPVRGGLQSILLYYT
DGEEASHSHKAASFSVPDMTDQWTRFTVVVEHEEVRLYMDCGEAERTTFHRRPEKLNFSH
NSGVFVANAGSTGLDNFVGSIQQLVIKDDPRAAEEQCEDDDPYASGYTSGDDALDDRETE
EEMMKNTHERKHGTAQEEDSVPVRAPPTEAPEVELDEYSGHQTSTEANEEMLIRGPHQTE
EPGESSGDGHIRHGSKGERGEPGPKGSPGPPGRPGSNPLPGTAQPGPRGTQGPPGIPGSP
GLPGRDGLQGSKGDKGDPGQRGSKGFAGLDGEAGAKGEKGDPGVGLPGPPGLPGIPGPPR
SRSVPYGADALGSGFEDLDSETDLIRGHPGLPGPPGPPGPPGPLSSSDTAEGLYQGHAGP
PGAPGRDGTPGKPGIPMFDEDWFSGSGSDGSGLSSGFSYDLGSGFSSGFSPESSFASGSG
LDFGSALGSGEGPTGKDGDPGLPGAVGEKGDQGLSGPPGPKGECGSESTAGSPGPPGPSG
PQGKRGPSGPPGPPGPPGPAGTKLFEEDMEGSGKSDMLIGAGVRGTQGPPGIPGPQGTKG
EDGAAGTPGLSVKGEPGDPGPEGLQGPAGLPGARGAKGEKGSQGSKGDCGVDGLSIPGPP
GPPGTPGTFINLSDLLLNVTDGMFNFTEIRGPPGPMGPEGLPGRAGFPGPRGPKGDIGPA
GVQGPAGFKGEKGEPGVTIAADGSLLSAPKGPQGPKGIKGDRGFPGPAGLMGPIGPAGQK
GEYGFPGRPGRSGMPGRKGDRGDSVGLPGPPGPPGQPGHPGRIIGLKGTVFPLRPRPHCK
KGRDAVTGGDSVGAKGNKGNVGTPGEPGTSGTFFLSAPGFPDGIVGARGDQGYQGQKGEK
GDGSLPGPPGLPGRSGLVGPKGESIIGPPGPVGPVGQPGAPGFGRPGPRGPPGPAGPPGI
VPAHGSGVSIPGPPGPPGPTGSPGYANPVTTYKTSHALSRETHRAAEGTLAYVSEKGGEL
YIRARNGWRKIQLGDLIQPGPSSSAASQSISRPGDWSRPSRSQSHSQELQEGSRGYQPIY
NVLPQTFNAVPGLHLVALNAPLKGDMRGIRGADFQCYQQARFMGLTTTYRAFLSSHLQDL
STIVRKADRTDMPVVNLRGEVLFSSWMSIFSGNGGTFNPSTPIYSFDGRNVMTDSAWPEK
LVWHGSNAVGIRLTSNYCEAWRTADMAVTGQAALLQTGRLLGQHTRSCSNHYIVLCIENT
YVGNTHQRRT
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgggagcccctcacctctctctcgctctcttcctcctcctctcctctcccgtacgagcc
cagtggtggagttacttctgggcaaaccctcaaaccagctccagctctcctcctcctccg
tccattcctccttcaatcccttctccatccatcaccaccctgggcacttctgacacccca
gggccaacacagtgggtggtggtaacggatgaaggggtgacagagaaagctccagagggt
agcactctgacggaggggtcggtgctggcccctacgcccagcccagggctgtcaatcttt
ggccgcagcactgcagaacctgggccgttacatccagaggagaacgcagggggaggcagc
aaagccaaggcccaatacaagacactgaaacactggaagagcgagcgaggctcaggaggt
cacctggacctgacggagttaattggcgtccccctccctccctccgtctccttcacccct
ggctatgagggctttccagcctacaacttcgggcccaacgccaacatcggccggctcacc
aagacctttgtgccagggtcattctacagggactttgccatcatcgtcacggtgcgtcca
tccactcaaagaggaggcgtgctcttcgccatcacagacgcccggcagaagctggtggag
ctgggtttggccctcactccggtgcgcgggggcctccagagcatcttgctgtactatacc
gacggggaggaagcctcccacagccacaaagctgcgtcctttagtgtcccagacatgacc
gaccagtggacacgattcacggtggtggtggagcatgaagaggtgcgtctctacatggac
tgtggagaggccgagaggactactttccaccggaggcccgaaaaactcaacttctcgcac
aattcaggagttttcgtagccaatgcaggaagcacagggctcgataactttgtgggatcc
attcagcagctggtgataaaagatgatcccagagcagctgaggagcagtgtgaagacgat
gatccttatgcctcgggatacaccagtggagatgatgctctggatgacagagagacagag
gaggagatgatgaagaacacacatgagaggaaacatggcacggcacaggaggaggacagc
gttccagttagagctccgcccactgaggctccggaggtggagcttgatgagtattccggt
caccagacctcaacagaggccaatgaagaaatgctgatcagagggccacaccagacagag
gagccaggggagagctcaggagatggtcatatcagacacggttcaaagggagagcgtgga
gagcctggacccaaaggctcacctggccctcccggtcgcccaggttccaaccctctacct
gggacagctcagcctggtccaagagggacacaaggaccaccaggaatccctggatcccca
ggactgcctgggagagatggactgcagggaagcaagggtgataaaggagatccaggtcag
agaggatctaagggatttgcaggtctggatggagaagctggagctaaaggagagaaggga
gacccaggagttggtctaccaggtcctcccggcctccctgggattcctggaccccccaga
tcacgcagtgtaccttatggagcagatgccctgggttctgggtttgaagacctggacagc
gaaactgacctcatcaggggtcaccctgggctaccggggcctccgggacctcctggtccc
ccaggacccctgtcatcatctgacacagctgaaggcctctatcaagggcatgctggacca
cccggtgcccctggtagagacgggaccccaggcaaacccggaataccaatgtttgatgag
gattggtttagtggttctgggtccgatggttcaggtttgagctcagggttctcctatgac
ctcggctctggtttcagctctgggttcagtcctgaatccagctttgcctctggttctggg
cttgactttgggtctgctttgggttcaggcgagggtccaacaggaaaagatggggatcca
ggtctaccaggagctgtgggagaaaagggagaccaagggttatctgggccacctggacca
aagggtgaatgtgggtctgagagtactgcagggtctccagggccaccagggccaagtggt
ccacaggggaagagaggcccatctggtcctccgggaccccctggccctcccggacctgca
ggaaccaaattatttgaagaggatatggagggatctgggaagagtgacatgctcattgga
gctggagtcagaggcacacagggtccccccggcatacctggcccacagggtactaagggt
gaggatggagccgcagggactccggggctctctgtcaagggtgagccaggggacccagga
ccagagggtcttcaaggtcccgctggactaccaggcgctaggggggccaaaggagaaaaa
ggcagtcaaggatccaagggtgattgtggtgttgatggactcagtatcccaggaccacct
gggcctcctggaactcctggaactttcatcaatctttccgatctgctgctcaatgtgacg
gacgggatgttcaacttcacagaaatcagaggaccgccgggccccatgggccctgaaggc
ttgcctggcagagctggatttcctggccccaggggaccaaagggagacataggccctgca
ggtgtccagggaccagcagggttcaagggagagaagggagagcccggggtgaccattgct
gctgacggatcactcttatcagcgccaaaaggcccccaggggcccaaaggcatcaagggt
gaccgtgggttccctggacctgccggacttatgggaccaataggaccagctggacaaaaa
ggagaatatggcttccctggtcgtccagggagatctggtatgcctgggaggaaaggtgac
agaggagattctgtcggtctaccgggacctcctggtcctccgggccaacctggacatcca
ggaagaattattggactgaaaggaacagtgtttccattgcgccccagaccgcactgcaaa
aaaggacgagacgcagtgacagggggagattcagttggagctaaaggaaacaaaggaaat
gtgggaacacctggagagccaggcacatctggtacatttttcctttcagcgcccgggttt
ccagatggaattgtgggtgctagaggtgatcagggataccaaggtcagaagggagaaaag
ggtgacggcagtttgcctggtcctccaggactgcctgggaggtcaggactcgtgggtcca
aaaggtgagtccatcattggccctccaggaccagttggccctgtgggtcagcctggagcc
cctggtttcggacgacccggtcccagaggcccacctggcccggctggacctccaggaatt
gtaccagcacatggatcgggtgtcagtatccccggccctcctggtcctcccggcccaaca
ggatctccaggatatgccaaccctgtgactacctataagacaagccatgctctgagcagg
gagactcaccgggctgcagagggaaccttggcctacgtgtctgagaagggaggagagctg
tacatcagagcacgcaacggctggcgtaagatccagctcggagacttgatccaacctgga
ccttcctcctcggccgcgtctcagtcaatcagcaggcctggagactggagcagaccgagc
aggagccagagccacagccaggagcttcaagagggcagtagaggatatcagcccatctat
aacgttctaccacagaccttcaacgctgtacccgggctccacctggtagcactgaacgcc
ccgctgaaaggggacatgcgtggcatccggggggccgacttccagtgctaccagcaggcc
cgcttcatggggctaaccaccacctacagggccttcctgtcctcacacctccaggacttg
tcaacgatcgtgaggaaggcggaccgcactgacatgcccgtggttaacctcaggggtgaa
gttttgttcagtagttggatgtccatcttctctgggaatggaggcacatttaacccatcc
acacccatctactcctttgacggacgcaatgtgatgactgactcagcatggccagagaag
ctggtatggcacggttccaatgcggtgggcatccgtctgaccagtaactactgcgaggcg
tggaggacggctgacatggcagttacgggccaggctgctctgctgcagacgggacgcctg
ttaggacagcacacccgctcctgctctaaccactacatagtgctgtgcatagagaacaca
tatgtggggaacacgcaccagaggaggacctga
DBGET
integrated database retrieval system
