Anoplopoma fimbria (sablefish): 129094990
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Entry
129094990 CDS
T09102
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
afb01009
]
129094990 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129094990 (sh3rf1)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129094990 (sh3rf1)
Protein phosphatases and associated proteins [BR:
afb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129094990 (sh3rf1)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129094990 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_1
SH3_9
SH3_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_11
Prok-RING_4
zf-Nse
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
129094990
NCBI-ProteinID:
XP_054459301
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All DBs
Position
8:complement(26965660..27014022)
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AA seq
851 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDATAKVLPCQHTFCRRCLQSILGSRGELRCPECRTLVECAV
DELPSNILLVRLLDGIKQRPRRAGPGPGVCTNGTSGAVARAHGGGAREPGAPGPQPQRAQ
AKSTLVRGVPQLPCAKALYNYDGKEPGDLKFIKGDVIILRRQVDENWYHGEMAGVHGFFP
TNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGD
KIGIFPISYVEFNSAARQLIELDKPSDSGGDSGEGASSGPQSNGAQRAGEKKNSKKRHSF
TSLTMSHKPMLAPPPQRHSMEISGPVLISSSNPTAAARIGELSGGLSCSAPSQVHICTTG
LIVTPPPSSPVTTATVFTFPSETSYTSISVDALPPPPPPPPQSSADGAAYSLAAGQRPSP
SISDQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVF
PGNYMSPVSRTASGSTQPKVPMSLCTQAGRGVTIVSPSSAALGVIVPGPDFNKPLAVCSN
AVPGNSLPAAVVTAAQTATGQQPKVPLHVGSQMTVNQARNAVRTAACHSQDRPTAAVTPL
QTATPVAYLPHLAVCPQPSSGPAQCCSRAGAAMGCAAASLTPPNVSAASLEGDALRPVTV
LTVNPTSNSTALNCRQDKREKKSLLKLLSSNKKKSRPSPPSSPTLEAEQAAAAEALHGAV
GPDTSPPSGSSGGVGGLEPEPSAALSSAFSSSSVPESSHRKSSPLDGCAPIAPPPRQPCS
SLLSQQHDARPIICERYRVVVSYPPQSEAELELKEGDIVFVHRKREDGWFKGTLQRNGRT
GLFPGSFVDSI
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcagtgctgctggatttgctcgagtgccccgtttgtctggagcgcctggat
gccacggcgaaggtcctcccatgtcagcacaccttctgccgccggtgtctccaaagcatc
ctgggctcccgcggagagcttcgctgcccggagtgccggacgctggtagaatgcgccgtg
gacgaactccccagcaacatccttcttgtgcgcctgttggatggcatcaagcagaggcct
cgcagggccggacccgggccgggagtctgcaccaacgggacctcaggagccgtggccaga
gcgcacggcggcggagccagagaaccgggcgccccgggaccacaaccccagcgggctcag
gctaagagcacccttgtgcggggtgtaccccagctcccctgcgccaaagcgctctacaac
tacgacggcaaggaaccgggcgacctcaagttcatcaagggcgacgtcatcatcctgcgt
cggcaagtggacgagaactggtaccacggcgagatggccggcgtccacggcttcttcccc
accaacttcgtccaggtcatcaagccgctgccgcagccgccgcctcagtgcaaagccctg
tacgactttgagctcaaggacaaggaggccgacaaggactgtctgccgttctccaaggat
gatatcctgaccgtgatccgcagagtggacgagaactgggcagagggaatgctgggagac
aaaattggaattttccccatctcatatgtagagttcaactcggcagctcggcagctgata
gagttggacaagccgtcggactccggcggagactccggtgagggggcgtcctcggggccc
cagagcaacggcgcccagcgtgcaggggagaagaagaacagcaagaagagacattccttc
acctccctcaccatgtcccacaaacccatgctagctccgccccctcagcgccactccatg
gagatcagtgggcccgtcctcatcagctccagcaaccccacggcagccgcacgcatcggg
gagctcagcggggggctttcctgcagcgcgccgtcacaggtacacatttgcacaactgga
ctaatcgtgaccccgccccctagtagtcctgttaccacagcaacggtcttcacgtttccc
tcggagacgagctacacatccatctctgtggatgctctcccgcctccccctcctcctccc
ccgcagtcctccgccgatggagcagcgtactcgttggccgctggacagagaccctccccc
agcataagcgaccaaagtgggagacaaagacccacagtctacgtggccatgttcccctac
acgccccgtaaggaggacgagctggagctgaggaagggcgagatgttcctggtgctggag
cgctgtcaggacggctggttcaagggcacctccatgcacacgggcaagatcggcgtcttc
cccggcaactacatgagccccgtcagcaggacggcgtcgggtagcactcagcccaaagta
cccatgagtctgtgcactcaggccggccgaggggtcaccatcgtcagcccctcctctgca
gccctcggggtcatcgttccgggtcccgatttcaacaagccgctcgccgtgtgctccaac
gccgttcctggcaactccctacccgcagccgtggtgacggcggctcagacggccacgggt
caacagcccaaagtccctctgcacgtcggctcccagatgaccgtgaatcaggctcgcaac
gccgtcaggacggctgcatgtcacagtcaggaccggcccacagctgccgtgactcccctc
cagactgctacacccgtggcgtacctgcctcacctcgccgtttgccctcagccttcctcc
ggtccggcccagtgctgctcccgggccggagcggcgatgggctgcgccgccgcgtctctg
actccacccaacgtcagcgccgcatccctggagggtgacgctctgagacccgtgactgtc
ctcaccgtcaacccgacttccaacagcacggctctcaactgccgacaggacaagagagaa
aagaagagtctcctgaagctgttgtcctccaacaagaagaagtctcgtccgtctcctccc
tcctctcccaccctggaggcggaacaagctgctgctgcagaggcgctccacggcgccgtc
ggccccgacacctcccctccctccggctccagcggcggtgtcggaggcctcgagcccgaa
ccttctgctgctttatcttctgccttctcgtcttcctcggtaccagaatcctctcaccgg
aagagcagccccctcgatggatgcgcacccatcgctcctcctcctcgccagccgtgctcc
tctctcttatctcagcagcacgacgcacggcccatcatctgtgagcggtacagagtggtg
gtgtcgtatcccccccagagcgaggcggagctggaactgaaggagggcgacattgtgttc
gtccacaggaagagagaggacggctggttcaaaggcacgctgcagaggaacggcaggacc
ggactgttccccggcagctttgtggacagcatctaa
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