Anoplopoma fimbria (sablefish): 129094994
Help
Entry
129094994 CDS
T09102
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129094994 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129094994 (ddx6)
03036 Chromosome and associated proteins [BR:
afb03036
]
129094994 (ddx6)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129094994 (ddx6)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129094994 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
129094994 (ddx6)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129094994 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
129094994
NCBI-ProteinID:
XP_054459308
LinkDB
All DBs
Position
1:complement(27035318..27048697)
Genome browser
AA seq
489 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGGGGGGGGHQQQQLNQMKGTINNG
NSQLAPTTNAVIKPGDDWKKSLKLPPKDTRMRTSDVTATKGNEFEDYCLKRELLMGIFEM
GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAMVIVPTR
ELALQVSQISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGV
AKVNQVQMVVLDEADKLLSQDFVVMMEEMLGFLPKQRQILLYSATFPLSVQKFMNAHLQK
PYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKI
SQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL
GETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIMPIPGIIDKSLYVAEYH
SEGGEEVKP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgccaggacagagaacccagtgattttgggcttgtccaaccagaatggacag
ctcagaggctcagttaagcctgctggagcaccaggtggaggaggtggaggaggaggagga
ggtggaggaggccatcaacaacagcaacttaatcagatgaaaggcacaatcaacaatggt
aattcccagctggccccgacaactaatgctgtcatcaagcctggagatgactggaagaaa
agtttgaagttgcctccaaaagacacgaggatgagaacttcggatgtgactgcaaccaaa
ggcaatgagtttgaagattattgcctaaagagggagctgctcatgggaatctttgagatg
ggctgggaaaagccatctccaatccaggaggaaagcattcccattgcactgtcaggaagg
gatatcttggccagagccaaaaatggcacgggaaagagtggagcctacctcattccctta
cttgaacgcattgacctgaagagggactgcatacaagctatggtcatagtgcccacccga
gaactggctctgcaagtaagccaaatatctatccaggtcagcaaacacatgggtggggta
aaggtaatggcaaccacaggtggaaccaacctacgtgatgacatcatgagactcgatgaa
acggtacatgtgatcattgccactcctgggagaattttagacctcatcaagaaaggagtg
gccaaagtcaatcaagtgcagatggttgttctggatgaagcggacaaactcctgtctcag
gactttgtggttatgatggaggaaatgctgggctttctgcccaaacagaggcaaatcctg
ctttattctgcaaccttccctctcagcgttcagaagtttatgaatgcacacttgcagaaa
ccctatgagatcaacctgatggaggagctcacactgaagggtgtgactcagtattacgct
tatgtaactgaaaggcaaaaagtccattgccttaacaccttgttctccaggctccagatc
aaccagtcaataatcttctgcaactcctctcagagagtggaactccttgccaagaagatc
tcccagcttggttattcatgtttctacattcatgccaagatgagacaggagcatcgcaac
cgtgtgttccacgacttcagaaacggcctctgccggaatcttgtctgcactgacctcttc
acaagaggaattgacattcaagctgtgaatgttgtgatcaacttcgactttcccaagctg
ggagaaacgtaccttcatcgcattggtagatctggccgctttggacacctgggtctagcc
atcaacctcatcacttacgatgatcgcttcaacctgaaagggattgaggagcagcttgga
acagagatcatgcccatccctggaatcattgacaagagcctatatgtggccgagtaccac
agtgagggtggtgaagaagtcaagccatga
DBGET
integrated database retrieval system
