Anoplopoma fimbria (sablefish): 129095308
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Entry
129095308 CDS
T09102
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04137
Mitophagy - animal
afb04140
Autophagy - animal
afb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
129095308 (hif1al)
04137 Mitophagy - animal
129095308 (hif1al)
04148 Efferocytosis
129095308 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129095308 (hif1al)
Transcription factors [BR:
afb03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
129095308 (hif1al)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
129095308
NCBI-ProteinID:
XP_054459686
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All DBs
Position
1:29198819..29218889
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AA seq
684 aa
AA seq
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MEDKEETVVVQRSDQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVCTHLDKLTIVRV
ALSFLRMHHILQPGENRKEESEEEEEEEEEEEEEDPMDTFYPQALAGFIMVMTEEGDMTY
LTENVSTHIGITQLELLGQSIYDFVHPCDQEELRDLLTPRPGSSKKTLAERPSERNFFLR
MKSTLTSRGRTVNIKSATWKVLHCTGHIRQLGGGSASPPVGGVMTLLCEPIPHPSSVEFP
LDTHTFLTRHSMDLHFTHCEGRVTELVGYKPEDLIGRSAYEFHHALDSDHVNKSMHTLMS
KGQVTTRHYRFLASSGGFVWAETQATVLYSSRTSQPEAVVCLNFILSAVEQPDLVFSVEQ
VGSGQASEAEPQTMAVTPQDCGNSDISDSDSDGECLTSYGLTKGAGLNPSSAAELFLKLK
ENPEDLLQLPPEAGNAIVPLTDDFVELSFASLPSPDSLPDHPQDLCSPQLRQLLSPIFST
ITPPSSSSSSPASPPDVELSPCEEDVTDTSKVEKFFAVWPEDDQKKEETLEMGVMDLDML
APYISMDDDFQLTVLSLPEEADNPPSSSSEPSAVRPEVTVSRKRTHNPDEETPSQLMVQD
KRWKQDSPSIEEELLLSHRLLSCLEETDQSDLFLDPGPGGRSQLLTDRDPVLGGTHGLCD
TAALMRNAFTARPPDLSPPLTPMT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaagaggagaccgtcgtggtccaacgttcggaccagaggaagctgcgttcc
cgtgatgcggcccgatgtaggcggagtcaggagacggaggtgttttatgagctggcccgc
actctgccgctcccccgtcgagtctgcacccacctggacaaattgaccatcgtgagagtc
gccctgagcttcctgcggatgcaccacatcctccaacccggtgagaatcggaaagaggag
tctgaagaggaggaggaggaggaggaggaggaggaggaagaagatccaatggatactttc
tatcctcaggcgctggccggcttcatcatggtgatgacggaggaaggagacatgacctac
ctgacagaaaacgtcagcacacacatcggcatcacacagctggagctgctgggtcagagt
atctatgactttgttcatccgtgtgatcaggaggagctcagagacctgctgactccacgt
ccaggttccagtaagaagacgttggcagagcggccgagtgagaggaacttcttcctgcgg
atgaagagcactctgaccagcagggggcgcaccgtcaacatcaagtctgctacctggaag
gttctccactgcactggtcacatccgtcagctgggcggcggctccgcgtcgcctcctgtg
ggcggagtgatgactctgctgtgcgagcccatccctcacccttccagcgtggagttccct
ctggacacgcacaccttcctcacccgccacagcatggacctgcacttcacacactgcgag
ggcagggtgacagagttggtgggatacaaacctgaagatctgattggccgctcagcctac
gagtttcatcatgcactcgactctgatcacgtcaacaagagcatgcacacactgatgtcc
aaaggtcaggtgactaccagacactaccgtttcctggcgagcagtggcggctttgtgtgg
gcggagactcaggccaccgtcctctacagcagcaggacgtctcagcccgaggccgtcgtc
tgcctcaacttcatcctcagtgctgtggagcagccggacctcgttttctccgttgagcag
gtcggttctggccaggcgtctgaggctgagccccaaacaatggcggtcacgccacaggat
tgtgggaattccgacatcagcgactctgactccgatggcgagtgtctcaccagctacggt
ctgactaagggcgcaggtttgaatccctccagtgctgcagagctcttcctcaaactgaag
gagaatccggaggaccttctccagttgcctcccgaggccggaaacgccatcgtcccgctg
acagatgattttgttgagctgtcgtttgccagtctgcccagtccggactcattgccggac
caccctcaggacctgtgctctccacagctgcgacagctcctctcacccatcttcagcacc
atcactccaccttcatcatcatcctcatcaccggcctctccacctgatgttgagttgagt
ccctgtgaggaggatgtgacggacaccagcaaggtggagaagttctttgctgtttggcca
gaggacgatcagaagaaagaggaaacactggagatgggggtgatggatctggacatgttg
gctccttacatctctatggacgatgacttccagctgaccgtcctcagtctgccggaggaa
gcagacaatcctccgtcttcttcgtctgagccctcagctgtgaggcctgaggtcacagtg
agcaggaaacggactcataacccagatgaggagacgccgtcccagctgatggttcaggac
aagagatggaaacaagattctccttcgatagaagaggagcttcttctcagccacagactt
ctgagctgtctggaggaaaccgaccaatcagatttgttcctggacccgggtcctggaggg
cgaagtcagctgctcacagacagagaccctgttttaggaggcacacatggactctgtgat
actgcagctctgatgaggaacgcattcaccgctcgtccacctgacctgtcgccgccgcta
acgcccatgacttga
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