Anoplopoma fimbria (sablefish): 129095432
Help
Entry
129095432 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129095432
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129095432
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
U-box type E3
129095432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_3
zf-CCHC
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
129095432
NCBI-ProteinID:
XP_054459837
LinkDB
All DBs
Position
9:7788547..7804133
Genome browser
AA seq
1771 aa
AA seq
DB search
MSCVHYKFSSKLDYNTVTFDGLHITLNELKKQIMGRERLKATDCDLQITNAQTREEYTDD
EAHIPKHSSVIVRRTPLGGVKPAGRTFIVDRSDTAVVGSSRPTDSSPSMSLAQLAKTANL
VDANASEEDKIKAMISQSNHEYDPIHYSKKAVGPPPAHYTCFRCGKAGHYIRQCPLLLIQ
DKSVEGPKPVRISKGIPQSFMVKAEPGTKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
PHDQSSSEDDTDPIPDELLCPICNDLMTDAVVIPCCGNSYCDDCIRTALLDSEEHTCFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKHVRKQLQNAAPQPPRPQLVRPMHSRQQDP
LMANIIHPPPTSAPSPVPQAQVPSPAPVPAPATAPASAPAPALAPAATSAPTSAPTPPHA
AAVEEQDHSPAPAPAVDHHSPMHSSSHGEPPPPGETNPEPTVTPDSSGTSNYHLPVIGHP
PPLRPPHPPGHQSRPHHSPRGGGRPWERFYRGRGDHPSTHLQTAPPPAPIPPVYPAPSMY
PPPPQSXPPPYTSGPGLLPPVIGYQPQPLYAPGPPGLNPPWVAPGTQPPLMPLPPRSAPL
SKEDFYRQRHRQDTVTSKLDEFTKDFHKELMKYRNAPKRRRPSYSRSRSYSRSPFSRSPY
SRSRSRSRSRSRSYSYSPSRSRSRSHGRSYPRSPYNRRNGRSYGRSRSRSRSRSRSYGYR
RSGTPRSPPPYRPPGWEGAEGAGPYRSRSRTRSPGPGGFRTRSPAVRKPPPRELPPYELK
GPSPGGNERWERERYRQWEKEYADWYNQYYKDYDNPHPSMHHRARGSRDRERDRMSPLSR
DYSPQGRGRRGRDERGAPPHHPQSSSSSGTKSSAKVLKTKKVKKRRTGDESETSHQSVDR
GDATPVRDEPMDEIPSLVKTPPMSSKASVGASSSKAPASKSTATPVKPSTKSTSKTPSDR
SKKDKGQKVKAKVKTESVKVKTDKVKKKPGDVVVTKKDSSSSSSSGTKPLKPIKTKPEET
SNSLPKKEKGKSSSVRPALLKTPPLSCQNLPHHHPSLHDGPRPGHDMRGRRDLPQGGGLL
PTPHQHGLSLLHRPNSPDGRRRMGDEGRSLLGPPPGKLRRIDGLGVGGDVISHSHMSHQP
PVHRLPPPSDRPGLLPIPGSRDMGRGDSDRGSIRPLMDLQVKPLTQRRIKLNRDLGRKGS
TETATTDRPPSGSEKTSSTSDRSSTTNLSEGDRPSSTAEGAVRKERSGSAERGVGRERPG
SAGERLQGSDREQSRSSGLDRERDRASGSDRGMTSDRDRDRASSSQKLAVTVERDPDGER
SVRTERTERTDRKTSSAGGRSVSLDKVTIAEKSTVSRSLTDPQEKPSTSSKERGEGSERS
AKSDRSVSKDRAERSVPSGEKPAAAHREAVKDGEEPVVKSKPKISRKALTSPTSSSTRSS
QETKRDSDKDQKSASSKPAEQPAASPVNSRVRTPSASPEPSPASEEPLIQPPPRSKWERE
DDEEGQENGLSAPKEPSPVPQKGRGREGPTEAPKPVRSEGRDAPREERRGAVREERKGRA
PREEGKGGRTAQTNNDKPTKIKLVREEGRGGGGGGREEGRAAAREERRGGVREEGRGATG
KEERAAEGRGGGRDESRGPEPRRQRLCSDLGRETDEAAFVPDYSEGEGSDTERGRSGSAS
LSGSQASSPSQSNHSGSAATNTTADKKKKKHKKHKKHKKHKKHLAQDKEGEQKEHKHKHK
KKKHKKSKDKDVEEEEEKVEKVEKVEEGAPH
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactataagttctcttccaaactggactacaacactgtcactttcgat
gggctgcatatcaccctcaacgagcttaaaaagcagattatgggccgagagcgcctcaag
gccacggactgcgacctgcagatcaccaatgcgcagactcgagaagaatacaccgatgat
gaagcccacatcccgaaacactcgtccgtgatcgtccgccgcactccgcttggtggagta
aaacctgctggcaggacgttcattgtagatcgttctgacacagctgtggtgggatcttct
agacccactgattcttctccatctatgtcactcgcccaacttgccaagactgctaacctg
gttgacgctaatgcatcagaggaggacaagattaaagccatgatatctcagtccaatcat
gaatatgacccgatacattactccaagaaggcagttggacctccacctgctcactatacc
tgctttcgttgtggaaaggctggtcactacattcgacaatgccccttgctgctgatccag
gataagagtgtagagggtcccaagccagtaaggatcagcaagggcatccctcagagcttc
atggtgaaggcagagccaggcaccaaaggagccatgttaaccagcactggagaatatgct
atacctgctatagatgcggaggcatatgcacaaggaaagaaggagcgccctccgtttgtt
ccacacgaccagtcatcatccgaggacgatacagacccaatccccgatgaactcctgtgt
ccgatctgcaatgacctgatgacggatgccgtggttataccctgctgtggaaacagttac
tgcgatgattgtatcagaactgccttgttggactcagaggagcacacctgcttcacatgc
aaacagtccgatgtttcacctgataatctcatcgccaacaagtttctgcgacaggctgtg
aacaactttaagaacgagacaggatacaccaaacacgtgcgcaagcagctacaaaatgca
gccccgcaaccaccgcgccctcagttggtcaggccaatgcactcaagacagcaggaccca
ctgatggccaacatcattcaccctcctcctacaagcgcaccctcacctgtccctcaagca
caggtcccgtcacctgctcctgttccggctcccgctactgctcctgctagtgcacctgca
cctgctcttgctcctgctgctacatctgctcctacttctgctcctacccctcctcatgct
gctgctgttgaagaacaagatcattcaccagcacctgcacctgctgttgaccaccattct
cctatgcactcctccagccacggggaaccgcctccaccgggggagacaaatccagaacct
actgtgacaccagactcttcaggaacctcaaattaccatttacctgttattggccacccg
ccacctctaaggccgcctcatccaccaggtcaccagtcacgaccacaccactctccgaga
gggggaggcagaccctgggagaggttttacagaggaagaggagaccacccctccactcac
ctccagacagccccacctcctgcacctatccccccagtgtacccagctccgtccatgtac
cctcccccaccccagtccntaccccctccgtacacctctggcccaggccttctccctcct
gtcattggttaccaaccccagcctctttatgctcccggaccaccagggctcaacccacca
tgggttgcccctggtacccagccacctcttatgcctttaccccctcggtcagcccccctc
tctaaggaagatttctacagacagcggcaccgacaggacacagttacatccaaactggat
gaatttactaaagacttccacaaagagcttatgaagtacagaaatgccccaaagagacga
agaccatcgtattcaagatcccggtcatacagtcgctctccattcagccgttctccttac
tctcgctctagatccagatccagatcaagatccaggtcctactcttattctcccagccgt
tcccgttcccgctcccacggccggtcttatccccgctccccttataatagacgcaatggg
cgcagttatggacgatcacggtcaaggtcccgttcccgttcaaggtcttatgggtatcgt
cgctcaggcacaccccggtctcctcccccctaccgaccaccaggctgggagggagcagag
ggagctggaccatataggtcaaggtcacgaactcgctcccctggccctggtggcttccgg
acccgcagccctgctgtacgaaagccgcctcctcgggagctcccaccgtatgaactgaag
ggtcctagtcctggaggcaatgagcgctgggaaagagaaaggtatcggcagtgggagaag
gaatatgcagactggtacaatcagtactacaaagactacgataacccacatccctcaatg
catcacagagctcgtggcagcagagacagggagagggacagaatgtccccgttatccaga
gattactccccccaggggagaggaagaagaggaagagatgagagaggtgctccccctcac
catcctcaatcctcctcctcttcagggactaagtccagcgctaaagtcctgaagacaaag
aaagtaaagaagaggaggactggggatgaatcagagacatcacatcagtcggtagacaga
ggtgatgctactcctgtcagagacgaaccgatggacgaaatcccttcactcgtcaaaacg
cctcccatgtcctcaaaggcttcagttggagcctcgagctctaaagctccagcctctaaa
agcacggctacacccgttaaaccctcaaccaagtcgacatcgaagactccgtctgatagg
agtaagaaagataagggccaaaaggtgaaagctaaagttaagacggagagcgtgaaggta
aagactgacaaagtgaagaaaaagcctggagacgttgtggtgaccaaaaaagactcctca
tcctcctcctcctctggcacaaaaccgttaaagcccattaaaaccaaaccagaagaaact
tccaactctctccctaaaaaggaaaagggcaaaagctcttcagtgaggccggccctcctt
aagacccccccactgtcctgccagaaccttcctcaccatcatccctctcttcacgacggc
cctcgacccggccacgacatgcgggggagaagagatcttccacagggcggtggtctcctt
cccaccccccatcaacacggactctcactcctccacaggcctaactcccccgatggccgg
aggaggatgggagacgagggccgctctttgctcggaccccctcccggaaagctgaggaga
atagacgggctgggggttggaggtgatgtcatctcccactctcacatgtctcaccagccc
ccggtccacagacttccacccccctctgacaggccgggtcttcttcccataccagggagc
cgtgatatgggccggggagactcggatcgaggatccatcagacctctcatggaccttcag
gtgaagccactgacccagaggaggatcaagttgaacagagacctggggagaaagggcagc
actgagacagcaaccactgacaggccaccgtctggttctgagaagacctcctccacctca
gaccgatcatcgaccactaacctctctgaaggagaccgacccagcagcacagcagaaggt
gccgttagaaaggagcggtcgggatctgcggagaggggagtcggcagagagagaccggga
agtgctggagagagactgcagggttcagacagagagcagagtagaagctcaggactggac
cgagagcgggacagagcttcaggatcagacagaggcatgacgtctgacagagacagagac
agggcctccagctcacagaaactagcagttacagtagagagagacccagatggagagagg
tcagtgaggaccgagaggaccgagaggacagatcgaaagacctccagtgcaggagggagg
tctgtctctctggataaagtgaccatcgcagagaagtcgaccgtctccaggagcttgacc
gaccctcaggagaagccgagcacatcatccaaggagagaggagaagggtcagaacgatct
gctaaatctgacaggagtgtgtccaaggacagagcagagaggagtgtcccctcaggagag
aaaccagctgctgctcacagagaagcagtgaaagatggtgaggagcctgttgtgaagagc
aaacctaagatcagccgaaaggctctgacaagccccacatcgagctccactaggtcatct
caagaaacaaagcgggactcagacaaagatcagaagagtgcatcctccaaacctgcagaa
cagcctgccgctagccccgtgaacagccgggtccgcaccccgagcgccagcccagaaccc
agtccagccagtgaggagccgctcattcagcctcctcctcgctccaagtgggaaagagag
gatgatgaagaaggccaggaaaacggacttagtgcacccaaggagccctcaccggtgcca
caaaagggccgaggcagagaggggccgactgaagcgcctaaacctgttaggagtgaaggc
cgggatgctccaagggaggagaggcgaggagcggtgagagaagagaggaaagggagagca
ccgagggaagagggtaaaggaggcaggacggcacagacaaataatgacaaaccaaccaaa
ataaaacttgttagggaggaggggagaggaggaggaggaggaggaagagaggaagggaga
gctgcagcaagggaggagcggagaggtggagtaagagaggaggggcgaggagcgacgggg
aaggaagagagagctgcagaaggccgaggtggaggacgagatgagagtcgtggcccggag
cccaggagacagcggttgtgctctgacctgggccgcgagacggacgaggcggccttcgtg
cccgactacagcgagggcgaaggctcggatacggagagaggaaggagcggcagcgccagt
ctgtccggcagccaagcctccagccccagccagagcaaccacagcggctcggcagccacc
aacaccacggccgacaagaagaagaagaaacacaagaaacataagaaacacaagaagcac
aagaagcacctcgcccaggacaaggaaggagaacaaaaggagcacaagcacaaacacaag
aaaaagaaacacaaaaagagcaaagacaaagatgtggaggaagaggaggagaaggtggag
aaagtggagaaagtggaggaaggggctccacactaa
DBGET
integrated database retrieval system
