Anoplopoma fimbria (sablefish): 129095598
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Entry
129095598 CDS
T09102
Symbol
parn
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129095598 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129095598 (parn)
Enzymes [BR:
afb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129095598 (parn)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129095598 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
NCBP3
UPF0688
Motif
Other DBs
NCBI-GeneID:
129095598
NCBI-ProteinID:
XP_054460078
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All DBs
Position
9:complement(6178659..6187634)
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AA seq
684 aa
AA seq
DB search
MEVTRQNFKDSLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEGRYTKLKKH
SMDFLLFQFGICTFKYDQAKSKYITKPFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQDEEVQLREQSEERRNQHANGVGTQSFISPSSKGPAHVPEEHKDF
INRVIGKVEALFTNSEKTLDLDPCTGFQRKLIYQTLNWKFPKGIHVETVETEKKERFIQI
SRVDDEERKRREQQKRERSRXELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPLVE
TAEGFHSYDTAQEQLHEAGYDAFITGLCFVSMANYLGSFLTPPKAYISASSKLVEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIKSKQQDKDKHVHTPKSWGEDGWMKPHYT
SATSAATFGYSRGLRKRSISPVQGEQGAGDAPVTDGWSHYSYPDSTGSKKMKTDDKSGQA
IESKTSEGWLKTADSSDSAESSPVPEEEEEEKEEEESPEGNDAEGTVTWQQAPAVHGRKG
QKNKKKKPEEAESTTSLFEVPEVW
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccaaaattttaaagacagcttgaacacggtgtacagcgcgatagag
gaggcggactttcttgccatcgatggagaattttcagggataagtgacggtcctaatgtc
agtgcactcaccaacgggctggacactccggagggccggtacacgaagcttaagaagcac
tctatggactttctgctgttccagtttggaatatgcacattcaagtacgaccaggcgaag
tcaaagtatatcacaaagccttttaatttttatgtattcccgaaaccgttcaacaggacg
tctcctgacttaaagttcatctgtcaaagttccagcattgacttcctggccagtcagggc
tttgacttcaacaaggtgttccgtcatggaatcccgtacttgaaccaagacgaggaagtc
cagctgagggagcagtcggaggagaggagaaatcaacacgctaacggtgtagggacacag
tccttcatctccccatcctccaaaggccctgcacacgtacctgaggaacacaaagacttc
atcaacagggtgatagggaaggtcgaggccctcttcactaactcggagaagactttggac
ctggacccatgtactgggttccagagaaagctgatttaccagacactgaactggaagttt
cccaaggggattcatgttgaaactgtggaaacagaaaagaaggagcgtttcatccagatc
agcagagtagatgacgaggagaggaagaggagggaacagcagaaacgggagaggagcagg
tgagagctaaatgatgctgtcggcttctccagagtcatccacgccatctctaaatctggt
aaacttgtggttggccacaacatgctgttggatgtcatgcacaccatccaccagttctac
tgccccctgccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttcccaaga
cttctggacacaaagttgatggcttccactcagccttttaaggagctgatcactaacacg
tctctggcagagttggagaaacagttgaaggagagccccttcaagtcgccactagtcgaa
acggcagaggggttccacagctatgacacagcccaggaacagctccacgaggccgggtac
gatgccttcatcactggcctctgtttcgtctcaatggccaactatctcggctctttcttg
actccacccaaagcgtacatctctgctagctccaaactagttgagcctttcttcaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagacttgcaa
cctaaaagagaccatgtcctgtatgtcaccttccccaaagagtggaagacgagtgacctc
taccagctctttagtgcctttggaaacatccaggtttcttggatagacgacacgtcagca
tttgtgtccctgagtcagacggaccaggtacagatagccatgaacaccagccgctatgca
gagagttacaggatccagacgtatgcagagtacatcaagagcaagcagcaggacaaggac
aagcacgtccatacgcccaaatcctggggggaggacggctggatgaaacctcactacacc
tccgctacttctgctgctacttttggatattcaaggggtctgaggaaacgcagcatcagt
cccgttcagggagagcagggggccggagacgctccagtcacagacggctggagtcactac
tcgtatccggatagcacgggcagcaagaagatgaagactgatgacaaaagtggacaggcc
atcgagagcaagacctcagaaggttggctaaagacggcagattcatcagattcagccgag
tccagtccggtccctgaggaggaggaggaggagaaggaggaggaagagagtcctgaaggc
aatgatgcagaggggacggttacctggcaacaagccccggcagtccacgggaggaaaggt
caaaagaacaagaaaaagaagcccgaagaggctgaatccaccacatcgctgttcgaggtt
ccagaagtctggtag
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