KEGG   Anoplopoma fimbria (sablefish): 129095648
Entry
129095648         CDS       T09102                                 
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03030  DNA replication
afb03410  Base excision repair
afb03420  Nucleotide excision repair
afb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129095648 (rfc1)
   03410 Base excision repair
    129095648 (rfc1)
   03420 Nucleotide excision repair
    129095648 (rfc1)
   03430 Mismatch repair
    129095648 (rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afb03032]
    129095648 (rfc1)
   03400 DNA repair and recombination proteins [BR:afb03400]
    129095648 (rfc1)
DNA replication proteins [BR:afb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    129095648 (rfc1)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     129095648 (rfc1)
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 PTCB-BRCT AAA_30 AAA_5 AAA_14 RuvB_N Rad17 BRCT_2 AAA_17 NTPase_1 AAA_7 AAA_33 RNA_helicase nSTAND3 AAA_18 AAA_19 AAA_16 Herpes_UL25
Other DBs
NCBI-GeneID: 129095648
NCBI-ProteinID: XP_054460149
LinkDB
Position
9:19522657..19534609
AA seq 1192 aa
MMDIRRFFAPTSDKSAVQKPAANGNVRTEKKKKNPLSSDEEVKKKKKETAKVKSSKPEEK
QKDSEKKRKKRAVIESDSEDEKPVSKTKKSPKVKQTTSKKEPPPKKDPVQYVSETDSDSD
NFQTLKKVSKPKQNGTAKQTKSDAGSARPGVKEELKSPSKPSTTQGKAALKSPVTPKSTL
PPPCKQTPTSVLDYFGNATVQRSDKKLVASTKRKAPTQDADDLMSDEQIAKQLQMDEDMM
ELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKPATTAFPKMSSTDSAAGSKSSLSKT
DRRGSVSEDVIGPTPKKEPAPVKASLKLAMMKKKAEERDEGPKGKTPISPTKIKISPKKE
PLASSSSDKKFTPKTGTTPTTVKTSPKKPESTSTSPEDAEKKKGNSAAFRNFLNRDGPRA
LGSKEIPQGADNCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRD
SGVSKLEKAESHGTKILDEDGLLELIRTKPGKKSKYEITAEAESKASKTRTPPSKTSKST
PKAQKISPSKGNSRSPHTPSPSKTSLAQGHGARTRYGSTPPGRGSGHTARRELGLSSSSS
SSSSSAQGKSSPAATGEDASLLWVDKYRPLSLKTVIGQQGDQSCANKLLRWLQNWNKHHS
GGSSKPAAARFGKFGGGKDDGSAFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASST
RSKNSLKEVVAESLNNTSIESFYKGTSQKVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLI
KNSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALN
EIILASNQDIRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFSSGED
SAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPRAAGGDLKSHLMLLSKAADSISDGDLV
DRRIRSGQNWSLLPTQAIYASVLPGELMKGYMSQFPTFPSWLGKFSSTNKHSRIVQELAS
HMGLKTMSSRQAVNLDYLYYLRQALLSPLQRHGAEGAGEAVQLLDNYQLIKEDVDSIMEI
SIWGGQPDPYSKLDSKVKAAFTRAYNKEVHLTPYSLQVVKKGRGGGESELGGEDVDNGAQ
ESEDEGLKTDAMIKQKKAKATKESKKKEKEEDSGKDKDKGKGKGKGKGKAKK
NT seq 3579 nt   +upstreamnt  +downstreamnt
atgatggacatcaggcggttctttgcaccgacttcagacaagtctgcggtgcagaagcca
gctgcaaatggaaacgtcagaacagagaagaagaagaagaatcctctgtcttcagacgag
gaggtgaagaagaaaaagaaagagaccgccaaggtgaaaagctccaaaccagaggagaaa
caaaaggacagtgagaaaaaacgaaagaagcgtgcagtcatagaatctgactcggaggat
gagaagccagtgagcaagacaaagaaatccccaaaagtgaaacagacgaccagcaaaaag
gagccaccgcccaaaaaagatcctgtgcagtatgtttctgaaacagactcagacagtgac
aactttcagaccttgaagaaggtctccaaacccaagcagaatggcacggccaaacagaca
aagtccgatgcaggcagtgctcgtccaggagtcaaagaggagctgaagtctccgtccaag
ccctccaccacacaggggaaagctgcgctgaagtctcccgtcaccccaaagtcaaccttg
cctcctccgtgcaaacaaacccccacctcagtactcgactactttggcaatgcgactgtt
cagcgttcagataagaagctcgtagccagcaccaaacgaaaggctccaacgcaggacgca
gatgatctgatgagtgatgagcaaatcgccaaacagctccagatggatgaggacatgatg
gagctggaaaagcaggtccatgaggacgaggaatttgccagaactctggccatgctggat
gaggagcctcaagcgaagaaggctcgtaaaggctctgatgaaaaaccagccactactgca
ttccccaaaatgagcagtacagactctgctgctggcagcaagagcagcctgtcaaagacc
gaccgaaggggcagcgtgtcggaggatgtgattggcccgactcctaagaaggaacccgcc
cctgtcaaagccagtctcaaactggccatgatgaagaaaaaggccgaggagcgagacgaa
ggaccgaagggcaaaacgccaatttcacccacaaaaataaaaatctctcccaaaaaggag
cccctcgcttcctcgagctctgacaagaagttcactcccaaaacgggaaccacacctacc
accgttaaaacttctccaaagaaaccagagagcacaagtacgagtcctgaggacgcagag
aagaagaagggcaactctgcagctttcaggaacttcctcaacagagatggaccacgagct
ctgggctccaaggaaatcccacagggtgcagataactgtttggagggctgcgtgtttgtg
ctgacgggggtcatggagtccatggagagggatgacgccaagtccctcatcgagcgctac
ggaggcaaggtgacgggcaacatcagcaagaagaccacctacctggtgcagggcagagac
agcggagtctccaagctcgagaaggcggagagtcacggaaccaagatcctagatgaggat
ggtctgttggagctgatcagaaccaaaccagggaagaagtccaagtatgagatcactgca
gaggctgagagcaaagcctcaaagaccaggactccccccagcaagacctcaaagagcacc
cccaaagcccagaagatctctccctccaaggggaattcccgttcccctcacaccccgagc
ccatcaaagaccagcctggcacaaggccacggtgccaggaccagatatggtagcactcca
cctgggagaggctcaggtcacacagcccgccgggaactcggcctttcctcctcctcctcc
tcttcttcatcctctgcacaaggaaaatcatccccagcagcaacaggggaggacgccagt
ctgctgtgggtggacaagtaccgtccactctctctgaagactgtgattggtcaacaggga
gaccagagctgtgccaataagctgctccgctggctgcagaactggaacaaacaccacagc
gggggctcttcaaagccagcagctgcgaggtttggtaagtttggaggagggaaagatgat
ggatcagcattcaaagctgctctgctctctggacctcctggcgtggggaagaccactaca
gctgcccttgtctgtgaggagttgggcttcagctacgtggagatgaacgcaagcagcact
cgcagcaaaaacagtctgaaggaagtcgtcgcagagtcacttaacaacaccagcatcgag
agcttctacaaaggcacctctcagaaagtgagcagtaaacacgtcctgatcatggatgag
attgatggcatggctggcaacgaggaccgcggaggaatccaggagatgatcggtctgatc
aaaaattcaaagattcccatcatctgcatgtgcaatgatcgtaaccaccagaagatcagg
tcactggccaactactgctttgatttgcgcttccagaggccgcgagtggaacagatcaag
ggagccatgatgtccctcgctttcaaagagggaatcaagatcccacccccagctcttaat
gaaattatcctagcctccaatcaggacatacgacaggtgatccacaacctgagcatgtgg
tcagccaaagacaaggtgatgacgtatgaccagtgcaagtcggacgcagccagtgcccgc
aaggacatgaaactggggccgtttgatgtttgtaggaaggtgttttcctcgggggaggac
agcgcccacatgagcctcatcgacaagtcggacctcttcttccacgactactcgctagcc
ccgctctttgtccaagagaactacctgcatgttcggccaagggctgcaggtggtgacctg
aagtcccacctgatgttgctcagcaaggcggccgactccatctctgacggagacctggtg
gacagacggatccgctctgggcagaactggtcgttgctgcccacccaggcaatctatgcc
agtgttttaccaggcgagctgatgaaaggctatatgagtcagttccccaccttccccagc
tggctcggcaagttctcctccaccaacaaacattcccgcatcgtccaggagctggcctca
cacatgggtttaaagacgatgagcagcagacaggcggtgaacctggactacttgtactac
ctgcggcaggcgctgctgagccctcttcagaggcacggagcagagggcgccggtgaagct
gtgcagctgctggacaactaccagctcatcaaggaagacgtggacagcatcatggagatc
agcatctggggcggacagccagacccctactccaaactggactctaaggtgaaggcagca
ttcacacgggcctacaacaaagaagttcacctgacgccgtactctctgcaagtggtgaag
aagggccgtggcggtggggagtcggagttgggaggagaggatgtggacaacggagctcag
gagtctgaggacgagggcctcaaaactgacgccatgatcaaacagaagaaggccaaagca
accaaggagtccaagaagaaggagaaggaggaggattctgggaaggacaaggataaaggc
aagggcaaggggaagggaaaaggcaaggccaagaaatga

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