Anoplopoma fimbria (sablefish): 129096001
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Entry
129096001 CDS
T09102
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2-like
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
afb04137
Mitophagy - animal
afb04144
Endocytosis
afb04340
Hedgehog signaling pathway
afb04350
TGF-beta signaling pathway
afb04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129096001
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
129096001
04350 TGF-beta signaling pathway
129096001
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129096001
04137 Mitophagy - animal
129096001
09144 Cellular community - eukaryotes
04520 Adherens junction
129096001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129096001
04121 Ubiquitin system [BR:
afb04121
]
129096001
03029 Mitochondrial biogenesis [BR:
afb03029
]
129096001
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
129096001
Membrane trafficking [BR:
afb04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
129096001
Autophagy
Mitophagy
Other mitophagy associated proteins
129096001
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
HECT type E3
129096001
Mitochondrial biogenesis [BR:
afb03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
129096001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
129096001
NCBI-ProteinID:
XP_054460613
LinkDB
All DBs
Position
9:complement(23942262..23996840)
Genome browser
AA seq
775 aa
AA seq
DB search
MSSQGVRRNGPVKLRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKADSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLNKL
GPNDNDTVRGQIVVSLQSRDRIGSGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RTTQWERPTRPASEYSSPSGRPLSCVVDENTPVMTPVNGAEASCPPGEPRIQERRVRSQR
HRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEELG
PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHRVLNPSPNGSRVAMDSQNTQHS
HPTPLKDQSGPCVPQQALSPAQLPEEAECLTVPKYKRDLVQKLKILRQELSQQQPQAGHC
RIEVCREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPY
YGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLL
GKPITLDDMESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKSVPV
TEDTKKEYVRLYVNWRFLHGIEAQFLALQKGFNEVIPQHLLKSFDEKELELIVCGLGKID
ISDWKSNTRLKHCTPDSNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKALQGAA
GPRLFTIHQIDANANNLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEETCGFAVE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccaaggggtgaggaggaacggcccggtgaagctgcggctgacagtcctgtgt
gcaaagaacctggcaaaaaaagacttcttccggttgccagatcctttcgccaaagtggtg
gtggatggctcaggacaatgccactctacagatactgtgagaaatactctcgacccaaag
tggaatcaacattatgatctatacatcggaaaggcagactcgatcaccatcagtgtgtgg
aaccacaagaagatccataaaaagcaaggcgcaggtttcctcggctgtgtccgcctcctg
tcaaacgccatcaaccgactcaaagacactggctatcaaagactggacctgaataagctg
ggccccaatgacaatgatactgtgagaggacaaatagtcgtaagtcttcagtccagagat
cgcatcggttcaggaggacctgtggtggactgcagtcgtttgttcgacaatgacttacct
gatggctgggaagagaggaggacagcctctggaaggatacagtacctgaaccacatcaca
cgtaccacccagtgggagagacctacaaggccagcgtcagagtactccagcccatcaggg
cggccgctgagctgtgtggtggacgagaacacgccagtgatgacgcctgttaacggggcc
gaggccagctgcccaccgggggaaccgcggatccaggagagacgggttcgatcgcagcgg
catcgcaactacatgagtcgaacacacctgcatacaccacctgacctgcctgagggttat
gagcaaagaacaactcagcagggtcaagtctacttcctccacacacagactggagtcagc
acctggcatgacccacgggtgcccagggacctgagcaatgtgaactgtgaggagctgggc
ccactgccaccaggctgggagatcagaaacacagccacaggtcgcgtctactttgtcgac
cacaacaatcgaacaacacagttcacagacccgcgactatctgctaacctgcatcgtgtt
ctcaacccaagtccaaatggttcccgtgttgccatggacagccaaaacacacaacacagt
catccgactccgctgaaggaccagagtggtccttgcgtccctcagcaggctctgtcccca
gcccagctgcccgaggaggcagagtgcctgacggtgcccaagtacaagagagacctggtg
cagaagctgaagatccttcgacaggaactttctcagcagcaaccccaggccggccactgc
cgcatcgaggtctgccgtgaagagatatttgaggagtcgtaccggcaggtgatgaagatg
cgtccaaaggatctctggaaaagactgatgatcaaattcagaggagaagaggggctggac
tatggcggggtagcaagggaatggttatacctgctttcccacgagatgctgaacccctac
tacggcctgttccagtactccagagatgacatctacacgctacagattaaccctgactcg
gctgtcaacccggagcacctgtcgtacttccacttcgtgggtcgcatcatgggcatggcg
gtgttccacggccactacatcgatggaggcttcactctgcccttctacaaacagctgctg
ggaaaaccgatcacgctggacgatatggagtctgtcgacccggacctccacaacagcctt
gtctggatcctggacaatgacatcactggcgtcctggaccacactttctgtgtagagcac
aatgcctacggagaaatcatccaacatgagctcaagcccaatggcaagagtgtcccagtt
acagaggacaccaagaaggagtatgtcaggttgtatgtgaactggcgtttcctgcatggc
atcgaggctcagtttctggctctgcagaaaggtttcaatgaggttattcctcaacacctg
ctcaaatcctttgatgaaaaagaactggagctgatagtgtgtggtctgggaaagattgac
atctctgactggaagtccaacacccgtctgaagcactgcacccccgacagcaacatagtc
aagtggttttggaaagccgtggagtcgtttgacgaggagaggagggcccggctactgcag
tttgttactggctcatccagagtccctctgcaaggcttcaaggctttacagggtgctgca
gggcccagactcttcaccattcatcagatcgatgctaacgccaacaacctgcccaaagcc
cacacttgcttcaaccggattgacattccgccctacgagagctacgacaagctatacgac
aagctgctgactgcgatcgaggagacctgtggcttcgcagtggaatga
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