KEGG   Anoplopoma fimbria (sablefish): 129096038
Entry
129096038         CDS       T09102                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129096038 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afb03019]
    129096038 (exosc1)
Messenger RNA biogenesis [BR:afb03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     129096038 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     129096038 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 129096038
NCBI-ProteinID: XP_054460661
LinkDB
Position
9:26714383..26718839
AA seq 194 aa
MSPMKLCVPGDKLCSAENCIPGTGVYLRHGYIYSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagtgcagaaaactgcatt
cccggcacaggagtatatctgcggcacggctacatatactcctcactagcaggatacgtg
ctcaagaagaacgagggagaggagttaccagtgatctcagtggtgcgggaaacagaaacg
caactactccccgatgtaggagcaatagtcacctgtaaggtgaccagcatcaaccccagg
ttcgccaaggtccacatcctttatgtgggctccacaccgctgaaggaccgcttcagagga
acaatcaggaaagaagatgtgcgcgcgacagagaaagacaaggtggaaacatacaaaagc
ttcagacctggcgacatcgtcttggcaaaagttatttctctcggtgatgtgcagtcgaac
tacctgttgacaacagcagagaatgaactgggggtggtggtggctcacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgtccgcggacgcacagcaaagag
ttccgcaaagtggcgcgagtgcagccggagtacctacaggcatga

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