Anoplopoma fimbria (sablefish): 129096038
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Entry
129096038 CDS
T09102
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129096038 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129096038 (exosc1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129096038 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129096038 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
129096038
NCBI-ProteinID:
XP_054460661
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All DBs
Position
9:26714383..26718839
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSAENCIPGTGVYLRHGYIYSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagtgcagaaaactgcatt
cccggcacaggagtatatctgcggcacggctacatatactcctcactagcaggatacgtg
ctcaagaagaacgagggagaggagttaccagtgatctcagtggtgcgggaaacagaaacg
caactactccccgatgtaggagcaatagtcacctgtaaggtgaccagcatcaaccccagg
ttcgccaaggtccacatcctttatgtgggctccacaccgctgaaggaccgcttcagagga
acaatcaggaaagaagatgtgcgcgcgacagagaaagacaaggtggaaacatacaaaagc
ttcagacctggcgacatcgtcttggcaaaagttatttctctcggtgatgtgcagtcgaac
tacctgttgacaacagcagagaatgaactgggggtggtggtggctcacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgtccgcggacgcacagcaaagag
ttccgcaaagtggcgcgagtgcagccggagtacctacaggcatga
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