Anoplopoma fimbria (sablefish): 129096420
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Entry
129096420 CDS
T09102
Symbol
herc3
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129096420 (herc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129096420 (herc3)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
129096420 (herc3)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
HECT type E3
129096420 (herc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
TMEM240
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
129096420
NCBI-ProteinID:
XP_054461170
LinkDB
All DBs
Position
9:12458623..12482761
Genome browser
AA seq
1047 aa
AA seq
DB search
MLCWGNSKDGQLGIGIERNPMFEPRNCHVFSGRGLKEVACGGQHSMFLLHDGSVYTCGSN
SCGQLGHSKPGTSPELVGALDTQTITMVSSGRSHSMAVNEQGQVFAWGAGEGGQLGLGTA
EAAVRIPRLVKRLCEQRISQVMCGNQHCIALSRDGQLFTWGQNTSGQLGLGKGEPSKLFP
QPLKSLSGIPLAQITAGGDHSFALSLSGAVFGWGKNRAGQLGLNDKQDRAVPCHIKFLRS
QKVCYISCGNEHTAALTKDGGLFTFGEGSWGQLGHGSTNNELLPRRVLELMGTEVSQITC
GRHHTLAFVPSSDVVYTFGCNSHGQLGTGVLGDARSPFPVKASFLTGGSHRTESKYTVTK
IICGGDHSFLLYSDDQSSVPSEDFRVINVSKSISPFNYERLNSWRLKLMYSTDSSVTNDI
IIQLSSTACWNASFLDQSDDTHFKTNPKIPGIDLNSVRKLFETLSKPAFSGLLEQATKSF
ESLLIPQLPRSPPDVEAMRIYLILSEYPALFDSKNYIRLTIPLAMAILRLDANPSKVLDN
WWCLVDGSVFTRMVDMYKSIVVFMLTGGKTLLVPVFYENYFVATLRLLEKLHKVNLKAHH
VEYSRFYIPDITSLVDIQEDYLKWFLSKADIKQSSSPSQSDFPSVNLCAYPFILNAQAKT
TMLQTDAELQMQMAVSGANLHNVFMLLTLEPHLARNPYLVLHVRRNHLVSDTLRELTMYS
DVDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELMDPVYGMFTHYKESNLLWFSDKCFV
EQNWFHLIGIICGLAIYNSTVVDLHFPLVLYKKLLNVSPTLEDFKELSPTEARSLQQLLD
YDGGDVEETFLLNFAITRENYGMTEVKELVPGGESISVDKNNRKEFVEAYLRYVFSDSVS
EQYSAFSSGFLKVCGGEILPLFQPSELMAMVVGNNNYNWEEMEKNAVYKGEYTATHPTVR
LFWEVFHEFPLEKKKQFLLFLTGSDRIPIHGMESLRIVIQSTTAEEHYLPVAHTCYNLLD
MPRYQTKEILRRRLTRAVEQYEGFSLV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctttgttgggggaattcaaaagacggacagctgggtattggtattgagagaaacccc
atgtttgagcccaggaactgtcatgtgttcagtggcaggggactgaaagaagtagcttgt
ggagggcaacactcaatgttcctgctgcatgatggcagcgtgtatacatgtggttctaac
agctgtggacagctgggccacagcaaaccagggacttccccagagcttgtaggagctctg
gacactcagacgataacaatggtgtcgagtggtcggtcccattcaatggcggtgaatgag
cagggtcaagtgtttgcgtggggagctggtgaagggggccagctcggtctggggactgca
gaggcggccgttcgaatcccaaggttggtcaaaagactgtgtgaacagcggatctctcaa
gtaatgtgtgggaatcagcactgcattgcactttctagagatggccagctgttcacgtgg
ggccagaacaccagcggacagctcggtctcggtaaaggggagcccagcaagctgttccct
caacccctgaagtctctgtccggtattcctttggcacagataaccgccgggggagaccac
agctttgctctctctttgtccggagctgtatttggttggggcaagaaccgagctggacaa
cttggtctcaatgataaacaagatcgagctgtcccgtgccacatcaaattcctgagatct
caaaaagtttgttatatcagctgtggaaatgaacatacagcagccctcacaaaggacggc
ggcttgtttacgtttggtgaaggctcgtggggtcagctgggtcatggctccaccaataat
gaacttttacccagacgagtgctggagctcatgggcactgaggtgtcccagatcacctgt
ggcaggcaccacacgttggcattcgtgccttcctctgatgtggtgtacacgttcggttgt
aacagccatggccagctgggcaccggagtactgggggacgccaggagcccgtttcctgtg
aaggccagtttcctgactggaggttcacacagaacagaatcaaaatatacagtgacaaaa
atcatctgtggaggagaccatagcttcttattgtactctgatgaccagagttctgtcccc
tcagaagacttcagagtgatcaatgtcagcaaatcaatctccccattcaattatgaaagg
ttaaattcatggaggttaaagctgatgtacagcacagattccagtgtcacaaacgacatt
ataattcagctctcttctacggcttgttggaacgccagctttttggaccaaagtgatgat
acccacttcaaaaccaacccaaagatccccggcatcgatctcaactctgtcagaaagctc
tttgagacgctcagcaaacctgctttctctggacttctggaacaggccaccaagagtttt
gagagtctgttgatccctcagctgccgcgctcccctcctgacgtcgaggccatgaggatc
tacctcatcttgtctgagtacccggccctgtttgactccaagaactacatccgcctcact
attcccctggcaatggccatcctccggcttgacgccaaccccagcaaagtattggataac
tggtggtgtcttgtggacggcagcgtgttcaccagaatggtcgacatgtacaagagcatc
gttgtgttcatgctaacgggaggcaagacgctgctcgtaccggttttctacgagaactat
tttgtggccactctgaggcttcttgagaagctccacaaggtaaacttaaaagcccaccat
gtggagtacagccgcttctacatccctgacatcaccagcctggtggacatccaggaagac
tacctcaaatggtttctgagtaaagctgacattaaacaatcatcctccccttcacagagt
gactttccctcagttaacctatgtgcctacccgttcatactgaacgctcaagccaagaca
accatgctgcaaacagacgctgaactgcaaatgcagatggcagtaagcggtgcaaaccta
cacaacgtctttatgctgctcacgctggaaccccatcttgccaggaacccttacttggtg
cttcatgtgcgcaggaaccatttagtaagcgacacactacgagagctcaccatgtactct
gatgtggacctcaagaaaccactcaaggtgatctttgacggagaggaggccgtggatgca
ggaggagtgactaaagagtttttcttgctgctgttaaaggagctgatggatccagtgtac
gggatgtttactcactacaaagagtccaacctgctgtggttctcagacaaatgttttgtt
gagcagaactggtttcacctgatcgggatcatctgcggtctggccatctacaactccacg
gtggtggacctccacttcccgctggttctctacaagaagctgctcaacgtgtcgccaacg
ctggaggacttcaaggagctgtcacccaccgaggccaggagtctacaacaacttctggac
tacgacggaggtgatgtagaggaaacgtttcttctcaactttgctatcaccagggagaac
tatgggatgacagaagtcaaggagctcgttcccggaggagagagcatcagtgtggacaaa
aacaacaggaaggagtttgtggaggcctacctgcgctacgtgttctcagactctgtgagt
gagcagtactcggccttctcctccggcttcctgaaggtttgcggtggggagatcctgccg
ctgttccagccgtctgagctaatggccatggtggtcggcaacaacaactacaactgggag
gagatggagaagaatgctgtttacaaaggggaatatacagccactcatccaacagtcaga
ctgttctgggaggttttccatgagtttcctctggagaagaagaagcagttcttattgttc
ctgaccggcagtgaccgtatccccatccacggcatggagagcctgcgcatcgtcatccag
tccaccacagcggaggagcactacctaccggtggcccacacctgctacaacctgctggac
atgccccgctaccagaccaaagagatcctgcgccgccgcctcactcgggccgtggagcag
tacgagggcttcagcctggtctga
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