Anoplopoma fimbria (sablefish): 129096972
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Entry
129096972 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afb00535
]
129096972
Proteoglycans [BR:
afb00535
]
Extracellular matrix (ECM) proteoglycans
Others
129096972
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
Fn3_PBP1
Fn3_ROS1
VWA_3
Fn3_Dep-1_3rd
DUF4959
Motif
Other DBs
NCBI-GeneID:
129096972
NCBI-ProteinID:
XP_054461622
LinkDB
All DBs
Position
10
Genome browser
AA seq
1872 aa
AA seq
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MPFSVRLSVCLLGFVFVSLLPQPARGQVSSPRRFRAKILNPTKLHVSWKEPKGQFESYKV
VYSTRPGGEQKEIEVSKQEAKLIIEDFDPSKEYNFKIVAVSGGQQSKPLQAKHEAQQSAV
EMVQSQQRQDSGVTEDNNEISEAEDDFMCKTPAISDIVILVDGSWSIGRINFRLVRTFLE
NLVRAFSVDIDKTRIGLAQYSGDPRIEWHLNAHTTKESVMAAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPARSLRDAGIELFAIGVKNADENEL
KAIASPPEDTHVYNVADFSVMSDIVEGLTKTICDRVEQLDKQIKGGGEPXPPPASVAPPR
DLVTSDLTPRSFRVSWTHAPGQVEKYRVVYYPASGGQPDEKVVQGTENSVELNYLNSLTE
YQVAVFAVYRSSASEALRGSTTTLALPMVNDLELFDISHSTMRVRWETAAGASGYMILYA
PLTEGDPADEKEVKVEDSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLRLTP
AGNLRFSDVDHSSSRLTWDSASRKAKSYRIMYVKTNGVQTNEVDVGRVTTWLLRNLTSLT
EYTVGVFAIYDEGQAEAATDSFTTKTVPDPLDPKSSDVSTDSFRVSWQHPASDVVLYRLS
WTPTDGGDSEEVLVNGNINTYLIEGLSPLTEYEVLLAAIYANEAESDEVILVESTVEKLT
TVATTTTTTATPRFGFRNMRIDEETTFSMRVAWQPMDTRNVRHYRLSYISAKGDRAEEQR
TVPTGQNSLVLQPLLSDTEYKVAITPVYSDGDGPTAVRMGRTLPLSAPKNLRVSEEWYNR
FRISWDTPPSPTMGYRVVYQPLSAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYT
TGSSEALAGRAKTLYLGVTNLNAYQVRMSSICAQWQPHRHASSYRVMIESLLNGQKQETK
LSGGSNRHCFNSLKANTQYKMSVYAQLQDGSEGPAVTATEKTLPIPTPKPTTPPTTTPLP
TIPLLRKVTAVCRAAKADLVFLVDGSWSIGDENFLKIIRFLYSTTGALDRIGPDGTQVAI
AQFSDDARTEFKLNSYSDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTTEGGVRRGI
PNVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDD
LDAFTKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVENRYGSVSGVSMVPG
TFNTFPCFHLHSDAFLAQPTRYLHPEGLPSDYTITLLFRLLPETPEEPFALWEVLDKNNQ
PLVGVILDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAISKTSAKVVID
CSAVEEKSINAAGNITIDGMEALGRMVRSRGNKDNSAPFQLQIFDIVCSTSWAGRDKCCE
LPGLRKEADCPAMPKACTCTQDSKGPPGPAGPPGGPGIRGARGDRGEPGPVGLTGPVGDT
GLPGPQGPQGQQGPSGRSIMGAPGGPGERGQKGEAGQQGAQGITGRSGPPGRDGPAGSRG
LQGKDGPAGRPGPTGTIGTPGAPGAQGNTGPSGKPGDLGPPGLPGSRGEKGERGDLQSTS
SVQAIARQVCEQLIQSHMARYNSILNHVPSPPVSIRTVPGPPGEPGRQGTPGLQGEQGPS
GRPGFPGQNGQSGQPGERGQSGEKGEKGSQGVGLQGPRGPPGPPGAQGQGRPGSQGPSGR
PGNPGSSGRPGVPGPVGSAGPPGYCDQNSCVGYNVGEGEDVIDRGAIPSVQLPPNVFQNY
DEVEEDDPYRYYEPNYPAPRPVAPDDLALTEDDIDLRSPGVHRISRSLEGEEEKVGLKRR
LKRGTKTPPGLI
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atgccgttctcagtcagactgagcgtctgcctgctgggcttcgtattcgtctctctgctt
cctcagccggcgcgaggtcaagtttcatcgccacggagatttcgtgccaaaatcctgaat
cccaccaagctgcacgtgtcgtggaaagagcccaaaggacagtttgagagctacaaggtg
gtttactccacacgaccaggtggagagcaaaaggagattgaagtatcgaagcaggaggca
aagctgatcatcgaggactttgacccctcgaaagaatacaactttaagatagtcgctgtc
agtggaggacagcagagcaaacctctgcaggccaaacatgaagctcagcaatcggccgtg
gagatggttcagtctcagcagagacaagacagcggcgtcaccgaggacaacaacgagatc
tcagaagccgaggacgacttcatgtgcaagactccggccatatcggacatcgtcatcctg
gtggacggctcctggagcatcggacgcatcaacttcaggctggtcaggacgttcctggag
aacctggtcagggccttctccgtggacattgacaagaccaggatcggtctggctcagtac
agcggagaccctcggatcgagtggcacctcaacgctcacaccaccaaggagtccgtgatg
gcggcggtgaagaacctgccgtacaaaggaggaaacacgctgacaggtctggctctcacc
ttcatcctggagaacagcttcaaacccgagtctgggtcccggcccggtgttcccaagata
ggaatcctcatcactgacgggaagtcccaggatgatgtcatacctcctgcacggagcctg
agggacgctgggattgaactgttcgccatcggggtgaaaaacgctgatgagaacgagctg
aaggccatcgcctctcctccagaggacactcacgtctacaacgtggcggacttcagcgtg
atgagcgacatcgttgaaggtctgactaagaccatctgtgaccgagtggagcagctcgac
aagcagatcaaaggtggaggagaaccanngcccccgcccgcctctgtggctccgccacgc
gacctggtgacctctgacctcacgcctcgcagtttccgggtttcgtggacgcacgcgccg
ggccaggtggagaaataccgcgtggtctactacccggccagcggaggacagccggacgaa
aaggtggtccaggggacggagaacagcgtggagctcaactacctcaactctctgacggag
taccaggtggccgtgttcgccgtctaccgcagctccgccagcgaggccctgagaggaagc
accaccacactggctctgccgatggtcaacgacctggagctgttcgatatctctcacagc
accatgagggtccgctgggagacggccgccggggcttctgggtacatgatcctgtacgcc
ccgctgacggagggagaccccgcggacgagaaggaggtgaaggtggaggactcggtgaac
gaggtggagctagaaggattgactccggccacagagtacacggtgacggtttacgccatg
tacggagaggaggccagcgaccccatgaccagccagcagaccacactgcggctgactccg
gcggggaacctgcgtttctccgacgtggaccacagctcctcccggctcacgtgggactcc
gcctccaggaaggccaagagctaccgcatcatgtacgtcaagaccaacggagtccagacc
aacgaggtggatgttggccgtgtgacgacctggttgctaaggaacctgacctcgctgacg
gagtacacagttggtgtcttcgccatctacgatgagggacaagctgaggccgccactgac
agcttcaccacaaagaccgtccccgacccgctagacccgaagagcagtgacgtctccacc
gacagcttcagggtgtcatggcaacacccggcctctgacgtggttctgtaccgactctcc
tggacgcccactgacggaggggacagtgaagaggttctggtgaacggaaacattaacacc
tacctgatagaaggactcagccccctcacagagtacgaagtcctcctcgctgccatctac
gccaacgaggcggagagtgatgaggtcatcctcgtcgagtccaccgtcgagaaactgacc
accgtcgctacgacgaccaccaccacagcaactcctcgttttgggttcaggaacatgagg
atcgatgaggaaaccaccttcagcatgcgggtggcctggcagccgatggacaccaggaat
gtccgacattatcggctgagctacatcagcgccaagggagaccgagcagaggagcagagg
acggtgcccacaggccaaaacagcctcgtcctgcagccgctgctgtcggataccgagtac
aaagtcgccatcactcccgtttactccgatggagacgggccgacggcggtgcggatggga
cgaacacttcctctctcagctcctaagaacctgcgtgtatcagaggaatggtacaaccgc
ttcaggatcagctgggacacgcctccttctcccaccatgggctaccgggtcgtctaccaa
ccgctctctgctccaggaccagctctggagaccttcgtgggggaagacgtgaacaccatg
ctgatcgtgaacctgctgagcgggacggagtacagcgtgaaggtcatcgcctcctacacc
accgggtccagtgaggctctggcagggagggccaagaccttgtatctgggggtgactaac
ctcaacgcctaccaggtgaggatgagcagcatctgcgcccagtggcagcctcaccgacac
gccagcagctaccgggtgatgattgagtctctgctcaacggtcagaagcaggagacgaag
ctgagcggaggatccaaccgtcactgcttcaacagcctgaaggccaacacgcagtacaag
atgagcgtctacgctcagctgcaggacggcagcgaaggcccggccgtcaccgccaccgag
aaaacacttcccatcccgaccccgaagccgaccacgccccccaccaccacgccgctaccc
acaatccccctgctaaggaaggtaacggctgtctgcagagcagccaaagcggacctggtc
ttcctggtggacggttcttggagtatcggtgacgagaacttcctgaagatcatccgcttc
ctgtacagcaccaccggagctctggaccggatcggacccgacggcacgcaggtggccatc
gcccagttcagtgacgacgcccggaccgagttcaaactgaactcttacagcgacaaggag
cggctgctggacgccatcaacaagatctcctacaagggagggaacaccaagacgggtcga
gccatccagcatgtgaaggagaacatcttcacgacggagggaggagtcaggaggggaatc
cccaacgtcctggtggttctcaccgacggccgatctcaggacgacgtcaacaaggtctcc
aaggagatgcagatggaaggctacatcgtgttcgccatcggcttcgctgacgccgactac
ggggagctggtgagcatcgccagcaaacccagcgacagacacgtcttcttcgtggacgac
ctggacgccttcaccaagatcgaggagaagctggtgacctttgtgtgcgaggccgccacc
gccacctgtccgtccgtaccgatgagcggcagcacaacaccaggtttccgtatgatggag
ctgttcggactggtggagaatcgctacggcagcgtctccggcgtttccatggttcccggc
accttcaacaccttcccctgtttccacctgcacagcgacgcgttcctggctcagccgacc
aggtacctccatcctgaagggctgccctccgactacaccatcaccctgctgttcagactg
ctgcccgaaactccggaggagcccttcgccctctgggaggtcctggacaagaacaaccag
ccgctggtgggagtcatcctggacaacggaggaaagactctgacgttcttcaacaacgac
tacaaaggagagttccagacggtcaccttcgaagggccagagatcaagaaactcttctac
ggcagcttccataagctccacatcgccatcagcaagacgagcgccaaagtggtgatcgac
tgcagcgccgtggaggagaagagcatcaacgcagccgggaacatcaccatcgacgggatg
gaggccctggggaggatggtccggtccagaggcaacaaggacaactctgcaccgttccag
ctccagatctttgacatcgtctgcagcacgtcgtgggccggcagagacaagtgctgcgag
ctccctggtctgaggaaggaggcagactgcccggccatgcccaaagcctgcacctgcacc
caggacagcaaaggcccgcccggccctgcaggaccaccaggaggcccaggaatcagagga
gccagaggagatcgtggagagccaggcccggtgggcctgactggtccagtaggtgatact
ggattaccaggacctcagggaccccaaggacaacagggacccagtggacgctccatcatg
ggagccccaggaggtccaggagagcgaggacagaaaggtgaagctggacaacaaggagca
cagggaataactggcagatctggacctccaggcagagacggacctgcaggatccagagga
cttcagggtaaagacgggccggctggcagaccgggtcccacaggaactatcgggacgcca
ggagctccaggggcccagggtaacacgggcccttcagggaaaccgggagatctgggacct
ccgggtcttcctggaagcagaggggagaaaggtgaacggggtgacctccagtcgacgtca
tcagttcaggccatcgcccggcaggtctgtgagcagctgatccagagccacatggcacgc
tacaattccatcctgaaccacgttccgagtccaccggtgtccatccgcaccgtaccggga
cccccaggagagcctggcagacaggggaccccggggctccagggagaacagggaccgtca
ggaagaccgggcttcccaggacagaacggacagagcgggcagccgggagagagaggtcaa
tcaggagaaaagggcgagaaaggatcccaaggcgttggactccaaggcccccgaggacct
ccaggaccccctggagcccaggggcaaggcagacctggcagccagggtccatcggggcga
cctggaaatcctgggtcttctggtcggcccggggtccccggacccgtcggctccgctggg
cctccggggtactgcgaccagaactcctgtgtgggctacaatgtcggagagggtgaggat
gtcattgaccgcggcgctatcccctcagtccaactgccgcccaacgtcttccagaactac
gatgaggtcgaggaggacgacccctaccgctactacgagcccaactacccggccccgcgg
cccgtggcgcccgacgacctggcgctcaccgaggacgacatcgacctgaggtcccccggc
gtccatcgcatttcccggagcctggagggagaagaagaaaaagtcgggctgaagaggaga
ctaaagagaggaacgaagacgccgcctggactaatttaa
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