Anoplopoma fimbria (sablefish): 129096987
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Entry
129096987 CDS
T09102
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129096987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129096987
03036 Chromosome and associated proteins [BR:
afb03036
]
129096987
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129096987
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129096987
mRNA degradation factors
5'-3' decay
Decapping complex
129096987
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129096987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
129096987
NCBI-ProteinID:
XP_054461633
LinkDB
All DBs
Position
10:11556533..11566655
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENIGPVVMGLNKQNGQLRGQTKPASVQSASTTQGKALGAPQIAGSAAQDGGGIK
FGDDWKKSLKLPPKDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGGDCDVEEIEE
KPGRQQDSA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaacattggcccagtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccagtcagcatccacaactcaagga
aaggctttgggtgccccccagatagcaggcagtgccgctcaggatggaggaggcatcaag
tttggagatgactggaaaaagagcctgaagctcccacccaaagacaccagggtcaaaacc
tcagatgtgacgtccactaaggggaatgaatttgaagattactgtctcaaaagagaactc
ctgatgggcatctttgaaatgggatgggagaaaccttcgcctatccaggaggagagcatt
cccattgctctttctggacgggatattctggctcgggctaagaacggaacagggaaaagt
ggagcctatctcatcccactgctggagagaatagacctgaaaaaggaccacatacaggca
ctggtcatggttcccacccgtgagctggctctgcaggttagccagatctccatccagatc
agcaaacacctggggggagtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgcctggatgagaccgtgcatgtggtcatcgccacgcctggtaggatcctg
gacttgataaagaagggagtggcaaaggtggatagagtccagatgatggtgatggatgag
gccgacaagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcgaccttccccatcagcgtgcagaagttc
atggccaagcaccttcagaaaccctacgaaataaacctgatggaggagctgactctgaag
ggcattactcaatactacgcctacgtcacagagaggcagaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcgattatcttctgtaactccactcagagggtg
gagctcttggccaagaaaatcactcagctgggctactcctgtttctacatccacgccaag
atgatgcaggaatacagaaaccgcgtgtttcacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctcttcaccaggggtattgacatccaggctgtcaatgtagtcatc
aacttcgacttccccaagaatgctgagacttaccttcatcgtattggaagatcagggagg
tttggtcacctgggcttggccatcaacctgatcacatcagaggaccgcttcaacctgaag
tccatcgaggatcagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggccgagttccacacgtctggaggcgattgcgatgtggaggagatcgaggag
aaaccgggacgccaacaggacagcgcctaa
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