Anoplopoma fimbria (sablefish): 129097056
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Entry
129097056 CDS
T09102
Symbol
cica
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129097056 (cica)
Transcription factors [BR:
afb03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
129097056 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
129097056
NCBI-ProteinID:
XP_054461734
LinkDB
All DBs
Position
10:complement(12917741..12949430)
Genome browser
AA seq
2515 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGAGDAPEGGEKRDSDENRDRSRSPQNRTPSASFSSNL
HSESSQTDPIRARGTSEREGPHREGLSETTVSLVMDSGKFLTSSDDRSGRSAVSGSSHSD
SGGSSCSNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCLSATGNHSNTSSSTPPP
LPLSGGVINHGSTGISHPDGNSQSRSLIDDFNSRTTGGEGPQDGSPGPPTLTLAGDRERP
GGVEGARDAERTSPVLLPRCSSTDTASEHSADLEVVGDTHAITQMSTHGLPSLPDALSDA
LAKGMKNQRVLARQLRRRSDEDGGGERRDEGEISDLVFRAGVVRKVSGEFGSLEVQLNGE
KTLCRYPYQHDSPPGVVDIILDAPPPGVHPIAIGTRVCVPFGNEEGSEGQWQWYREGVVT
QVDTHPAVANRYRVLLSEERPDSLDEEEDGRGTAVGTQAVWVSRQTLRLLVPPWDLDLPS
GGGQGGEEGVRDKEMELEDREEIDVEQEVCRLSRGMTPSVGSVLGRGIPYPGMVPVSSSS
GHSITSPVTPATVLNLAPGREWEIEKELERERDLQRIQEREMERERERENSAKQQQHHQQ
QQQQHHPYMPLTPEDDMEVSHFNMLPMGAIIPGAKQMALPQHRHIISKPPPGYLNPHLSV
VRGIGVPPTHLALNPHPPPSPVLLGLDPATAAAAAAVITTPQLPPLPPISSSTASSSRVD
KAQGGCSSSGGAGGGGGSGSGSTSSSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGK
QWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGSRERGGASSTGTLTPSDLRMSGG
RASSEFDWDETSRESSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAATMLVSLGGSR
SGTPSYSPISNQSPFSPTPSPSPSPLFGFRPANFSPITAPSSLTPRRHRQLSGTKMGTPG
VERERHLSGIVPTFQTNLTFTVPMSPSKRKLDTHPPPPLPAIQDYQTKPEQQQLVSMVGD
PSLGHNPAAFRVLSPQSQPTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPTPPSPLPQ
EPSPRRIVPLRDSPVIVRNPDVPLAKFSDGPLGRRERSRSREHNQPQHAALPGLQVPVPI
NGATTNGAVLLRNPTSTLVLVTSSSSLTPATGGHAALSSPSAMPTSLGSILSSSGSGGRE
RERKPEGHQDASSGGLPQPVACHPTPTALLPLILPAESPHPAPRKQIIMGRPGTVWTNVE
PRSVPVFPWHSLVPFLEPSQTGGAAQPADGQQLVNQSKEPRCGVALVTDGRTGPPDLERG
STSCPPPTNDNPPTERGGADSETESDIDDPFSPGVANDAAPSAGTMKRRTQSLSALPKDG
DRKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPNEKQQYHD
LAFQVKEAHFRAHPDWKWCNKDRRKSLSESRGMPKESRERSMSESIDPHAESQVPEGGKG
GGLCWPXGSERRGGLFVGQHPRPRAFSQSAVHTLEQRERDLEKEDGPSLFRRQPPPQALC
EDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQHGFQPVARSS
LPSPSTPHSDSTSAKGSGGGEGGGEEGSERKRKRDGGEEGSEGRSRKEEAAAGGGEGGGG
GGGVFSLSTAGPTSGQAPIASAQQGLNQVLGAVRMAPTMVTNVVRPVASTHVPIASKPVE
GAGACNSLPQEKNATLLIGGGGPQQLPIAAGGGGYLSSSSYPGPVSVTPVGGGALVTSLV
LGGSFPATQPVQLLTPQPQMPPHAQTPLPVLQPQLHHTGASISTLTPPAGPKPLAQVQYN
LPTEGPSSPQLTHQQILSLPTNTALANGMPSGVGIRVASVSPGTRVQTQSPVLQSKMLVP
MATVRTGSTPPNPSISLVAPPLPVQNGSVTGNKIIQIAPMPVVQTSVHPCNAAAVHPGSP
FPVSVATVMAPGAAPPQTVLLTSPPTRITYVQSGPGVTPSMPQQAMPAPGPAYLQSTLGF
TAIAPAGQTLLQPIAGQPPLLAPAPPLSCQPQTPPGPVGAAGRQVLTAIYPAPTVALPAG
VVSVTALPPAVAAPAQDVMGPSPPSAAGGWGSAVATLQPNAAEEMELKVEVKKENLADGP
TEDGWSSCAASSSLATCAMNVTAVKKEEDFGLHIKQENLRDGHSVERQSDSDREQERGVK
ESSEKKGGRETCREDHSSREAGPRTPPPPPPCLDXPPPPPAEREPPXSSKKTKFRPPPLK
KTPDSLEKALSETYFEERFAELPEFNPEEVLPSPTLQSLATSPRAILGSYRRKRRNSTDL
ELTAEDPSSPRRKTRRLSSCSSEPNTPKSAAKCEGEIFTFDRAGAEGEDLLGDLDRVPYS
SLRRTLDQRRALVMQLFQEHGFFPSAQATAAFQARYSDTFPTKVCLQLKIREVRQKIMQT
ATPGTFEPGVLAGLAEAGPAPSHSASFNQSAREDGGAEQQGDKARSPGEPKSEVS
NT seq
7548 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgataaaaaagcagggccggcgctctcctccctccaccagggccaaagggggg
aagcgccgcggagcgggggacgccccagaaggaggggagaagagagactcagatgagaac
agagacagaagcagatccccacaaaaccgaacaccctccgcctcgttctcttcgaatttg
cattcagagtcctcccagacggacccaatcagagcacggggcacttcagagagggagggt
ccccacagagaagggttgtcagaaacgacagtatcactcgtgatggattctgggaaattt
ttgacatcctcggatgatagatcggggaggtcagccgtgagtggcagcagccacagtgac
agtggtggtagtagttgtagtaacagtagtacaccaagcgccaacaacagcccaaacccc
gcctccagccgaaaaactgccaccttcaaggcccgcgttcccaagaagaagtacacctct
gaacactgcttgtctgctactggtaaccatagcaacacttcctccagcacgcccccgcct
ctacctcttagtggtggggtcattaaccacgggtcaacgggtatctctcaccctgatggc
aacagtcagagcaggagcctgattgatgacttcaacagcaggaccactggcggggagggt
cctcaggacggctccccaggaccccctaccctgacgttggcaggggacagggaaaggccc
ggaggagttgaaggggcgagagatgcggagcgaacgtcgcccgtcctcctaccccgctgc
tcctcaacagacaccgccagcgagcactcagctgacctggaggtagtcggggacacacac
gccatcacacaaatgtctacacacggactacccagtctccctgatgcactgtctgacgcc
ctcgccaaaggaatgaagaatcagcgtgtccttgcccgacagctcaggagaagaagtgac
gaggacggcgggggcgaaaggagggatgaaggggagatttcagacttggtgttccgggct
ggtgtggtgcgtaaggtcagtggtgaatttggaagcctggaggtgcaattgaacggtgag
aagacattgtgccgttatccctatcaacatgacagccccccaggggtggtggacattatc
ctagatgccccaccgcctggcgtccatccaatagctattggcacccgtgtctgtgtacca
tttggcaatgaggagggcagcgagggccagtggcagtggtaccgagaaggtgtggtgacc
caggtggacacacaccctgcagttgccaaccgctaccgtgtcctgctgtctgaggaaaga
cctgattcactggatgaggaagaggatggcagagggacagctgttgggacccaggcagtg
tgggtctcccgacaaacactcaggcttctggtgccaccatgggacctggatctgccgtct
ggagggggacagggtggagaggagggggtcagagacaaggaaatggaactggaggacagg
gaggagatagatgtagagcaggaggtgtgtcgtttgagccgggggatgacacccagtgtg
gggtccgtgttggggagaggaataccctacccaggtatggtcccagtttcctcctcatca
ggccacagcattacctccccagtcaccccagcgacagtcctcaatctggctccaggccga
gagtgggaaattgagaaagagttagagagggagagggacctgcagagaatacaggaaaga
gagatggaaagagagagagaaagggagaacagtgcgaagcagcagcagcaccaccaacaa
caacagcagcaacaccacccatacatgccactcacccccgaagacgacatggaggtgtct
cactttaacatgcttccaatgggggcgatcatacctggggccaaacaaatggcacttccc
cagcaccgccacatcatctctaagcccccgcctggctacctcaatccacacctttctgtg
gtacggggcatcggggtcccccctacccacctggccttgaatccccacccccctccttca
cctgtcctattaggccttgatccagcaaccgcagcagctgcagcagctgtcattaccact
cctcagcttccccctctccctcccatctcctcttccactgcatcctcctccagagtagac
aaggcccaaggaggatgttcttctagtggaggagctggtggtggcggtggatctggatca
ggttcaacctcctcctcttcctcacgttcgcgcacacctctgacagctgcccagcaaaag
tacaagaagggagatgtggtgtgcacgccaacaggcatacgtaagaagttcaatgggaag
cagtggaggaggttgtgctccagggaaggctgctctaaagagtcccagcgccgaggatac
tgctccagacacctctcaatgaggaccaaggagatggaagccagtggaggaagccgggaa
cggggtggagccagcagcacagggaccctgacgccgtctgacctccgaatgagtggtgga
agagctagctcagagtttgactgggatgagacgtcacgcgaaagcagtgaggccagcagc
cgtggaggagactcccgccctcgcctggtccttccctctctgctcccacaggacctctct
cgttttgactttgatgagtgtgaagcagcgaccatgctggtctccctggggggctcccgc
tcaggcacgccctcatactcgcctatctcaaaccagtcgccattctcccctaccccatca
ccctcaccctctccgctcttcggctttcgtcctgccaatttcagccccatcactgctccc
tcctcacttacgccacgccgccatcgccagcttagcggcactaagatgggtacgccaggt
gttgagcgagagcggcacttgtctgggattgtgcccacttttcagaccaatctcactttc
acggtccccatgagccctagcaaaaggaagctcgacacccacccaccccctccactgcct
gccatccaggactaccagaccaaacctgagcaacagcagctggtgagcatggtgggagac
ccatccctcggccacaaccctgccgccttcagagtcctttccccccagagtcagcccacc
accccctcctcactttcctttccccggcctcgtagcgccaccagcaggccaccatcctct
gctgcctccacgcctccacccatgctggtctctccgacccctccctccccgctgccccag
gaaccctccccacgccgcattgtgccgctccgtgattccccagtcattgtccgaaaccca
gatgtcccccttgccaagttctctgatggcccgttggggaggagagagaggagcaggtcc
agagagcacaaccagccccaacacgcagctctcccgggcctccaggtccctgttcccatc
aacggggccaccaccaacggtgcagttctcctgcgcaaccctacatccacacttgtcctg
gtcacctccagctcgtcgctgactccagccacgggaggccacgccgcattgtccagcccg
tccgcgatgcccacgtcattgggctccatcctgtcctcctctggctctggcggccgggag
agggagaggaaacctgagggacaccaggatgcctccagcgggggactgccccagccggtg
gcctgtcaccccacgccgacggcccttctgccgctcatactgccagctgagtcgccacac
cctgctccgcgcaagcaaatcatcatgggacgtccggggactgtttggaccaacgtggag
cctcggtcggtgccagtgtttccttggcattcgctcgtccctttcctggagcccagccaa
acaggaggggctgcccagcccgccgacggccaacagcttgtcaatcagagcaaagaacct
cgttgtggagtggccctggtgacggacggacggaccggccccccagacctagagagggga
tcgacgtcatgccctcccccgaccaatgacaatcctcctacagagaggggcggggctgac
agcgaaacagagagcgatatagacgacccgttctccccgggcgtggccaacgacgcggcg
ccctcagctggcaccatgaagaggcgcacgcagtccctcagcgccctgcccaaggacgga
gacaggaagagggagaaggaccatatccgcagaccgatgaacgcgttcatgatcttcagc
aagcgccaccgggccctggtgcaccagcgacatcccaaccaggacaaccgaacagtcagc
aagatcctgggcgagtggtggtacgctctggggcccaacgagaagcagcagtaccatgat
ctggccttccaggtgaaagaggcacacttcagagcacacccagactggaagtggtgcaac
aaggaccgcaggaagtcgctgtctgagagccgtgggatgccaaaggagtcgcgggagagg
agcatgtcagagagcatagatccccatgcggagtctcaggtgccggagggggggaaggga
ggaggcttgtgctggccgnggggatcggagcgtcgaggggggctgttcgtggggcagcac
ccccgtccccgagccttttcccagagcgccgtgcacaccctggagcaaagggagagagac
ctggagaaggaggacgggccgagtttgtttcgccgccagcccccgcctcaggccctgtgc
gaggacgtgaccagcgacgaagagcgcatggtcatctgtgaggaagagggagacgacgac
gtcatggaggattcctgtcctgaaggctccatcgacctcaagtgtaaagagagagtgacg
gacagcgatgaagacgaaccagatggacagcatggcttccagccagtggctcgctcctct
ctcccctctccctccacccctcactccgactccacttctgctaaagggagtggtggagga
gaaggaggaggtgaagaggggtctgagaggaagagaaagagagacggaggagaggagggg
agcgagggaagatccaggaaagaagaagcggcagctggtggaggagaaggaggtggagga
ggtggtggggtcttttctctgtccaccgctggcccgaccagcggccaggctcccatcgct
tcggcccagcagggtttgaaccaggtcctcggcgccgttcgcatggcccccacaatggtg
accaatgtggtgcgacccgtcgccagcacgcacgtccccatcgccagcaagccggtggag
ggagcaggcgcctgcaactccctgcctcaggaaaaaaatgctactctcctgattggagga
ggcggacctcagcagctgccaatcgccgcgggtggtggtgggtacctgtcctcatcctcc
taccccggtccagtcagtgtaactcccgtggggggtggcgccctggtcactagcctagtt
ctgggagggtcctttcccgccacccagccagtgcagctcctcaccccgcagccccaaatg
cccccgcacgcacaaacccccctacctgtcctccagccacagctccaccacaccggcgcc
agcatctccactctcacacctcccgctggccccaagccactagcgcaggtccaatacaac
ctgcccaccgagggcccgtcctcccctcaactcacccaccagcaaattctgtccctgccc
accaataccgccctggccaatggcatgccctcgggggtgggcatcagagtcgcatcagtc
agccccggaaccagagtccaaacccagtcgccggtcttgcagagcaagatgttggttccc
atggcaacagtgagaacagggtctactcctcctaatccctccatttctctggtcgctccg
cctcttcctgtgcagaacggctccgtgacgggaaacaagatcatccagattgctccaatg
cctgttgtccagaccagcgttcatccttgcaacgcagcagcagtgcatcctgggagcccc
tttcctgtttccgtggcaacagtgatggctcctggtgccgcgcccccgcagaccgttctt
ctgacctctccacctaccaggatcacctatgtccagtccggcccgggagttaccccgtca
atgccccaacaggccatgcccgctccgggccctgcgtatctccaatcaaccctgggcttc
accgccatcgccccagcggggcaaaccctgctacagccgatcgctggtcaacccccactt
ttggctccagccccgcccctcagctgtcaaccacagacccccccgggtcccgtgggagct
gctggtcgtcaggtgctaaccgccatctaccctgcgccaaccgttgcgctgcctgctggc
gtggtctctgtgactgctctgccgcctgcagtggccgccccggcccaggacgtgatgggc
ccttcccctccgtcggcggcaggggggtggggctcagcggtggcgacccttcagcctaac
gctgcagaggagatggagctgaaggtggaggtgaagaaggagaacctggcggacggtccg
actgaggacgggtggtcgagctgtgctgccagctcctcgttggccacctgtgcgatgaat
gtcacagcagttaaaaaagaggaggatttcggcctgcacatcaaacaggaaaacctcaga
gatggacacagcgtcgagagacaaagcgacagcgacagggagcaagagagaggggtgaag
gagagcagtgagaaaaagggaggcagggagacttgcagagaggaccacagcagcagagag
gccggacctcgcacccctcctccgccgcccccgtgtttggacnccccaccccctcctcct
gcggaaagagagccccctncttcctcgaagaagaccaagttcagacccccgccgctcaaa
aagacacccgactctctcgagaaggccctttcggagacgtactttgaggagcgctttgct
gagcttccagagttcaacccggaggaggtcctgccttcgcccactctgcagagtctagcc
acctcgccaagagccatcctgggaagctaccgcaggaagagacgcaactccaccgacctg
gagctgacggctgaagaccccagctccccaaggaggaagacccgtcgtctctccagctgc
agctcggagcccaacaccccaaaaagcgccgccaagtgtgagggagagatcttcaccttc
gacagagctggtgcagaaggagaggatctacttggagacttggaccgagtcccctactcg
tctctgcgcagaactctggatcagaggcgggccctggtcatgcaactgtttcaagaacat
ggcttctttccctcagctcaggccaccgccgccttccaggcacgctactcagacaccttc
cccaccaaggtgtgtctgcagctgaagatccgagaggtccgtcagaagatcatgcagacg
gccacgcccggaaccttcgagccgggagtgctggccgggttggccgaagccggccccgcc
ccgtcccacagcgcctctttcaatcaatcagcccgggaggacggaggggcggagcagcaa
ggagacaaagccaggagccccggggagccaaagagcgaggtgtcctaa
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integrated database retrieval system
