KEGG   Anoplopoma fimbria (sablefish): 129097070
Entry
129097070         CDS       T09102                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03082  ATP-dependent chromatin remodeling
afb03083  Polycomb repressive complex
afb04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129097070 (rbbp4)
   03083 Polycomb repressive complex
    129097070 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    129097070 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:afb03036]
    129097070 (rbbp4)
Chromosome and associated proteins [BR:afb03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     129097070 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     129097070 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     129097070 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     129097070 (rbbp4)
    PRC2.2
     129097070 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     129097070 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    129097070 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    129097070 (rbbp4)
   NuRF complex
    129097070 (rbbp4)
   NuRF complex (fruit fly)
    129097070 (rbbp4)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 CAF1C_H4-bd Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st DSE1_N Beta-prop_Aladin Beta-prop_WDR75_1st WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd EIF3I WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_WDR19_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st eIF2A Beta-prop_NOL10_N PAC11 ASA1 MIOS_WD40 Beta-prop_SPT8 CFAP251_N Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 129097070
NCBI-ProteinID: XP_054461752
LinkDB
Position
10:complement(19079374..19085340)
AA seq 425 aa
MADKEAGAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGK
DYSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFEASHYDSEKGEFGGFGSVSGKIEIEI
KINHEGEVNRARYMPQNPCIIATKTPTSEVLVFDYTKHPSKPDASGECHPDLRLRGHQKE
GYGLSWNPNLSGSLLSASDDHTICLWDISAVPKEGKIVEAKTIFTGHTAVVEDVSWHLLH
ESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILASGSADKTVA
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSTD
PEATA
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcggataaagaagcaggagcctttgatgatgctgtggaggagagggtgatcaatgag
gagtacaagatctggaagaaaaacactcccttcctgtatgacctggtgatgacccacgct
ctggagtggcccagcctcactgctcagtggctgccagacgtctccaggccagaggggaag
gattacagcgtgcaccgtctggtgttgggcactcacacgtctgatgagcagaatcacctg
gtcattgccagcgttcagctgcccaacgatgacgcccagtttgaagcctcacattatgac
agcgaaaaaggagagtttggaggcttcggctcagtgagtggcaagatcgagatagaaatc
aagatcaaccacgaaggagaggtgaaccgtgctcgctacatgccccagaacccctgcatc
atcgccaccaagacccccacctcagaagtgctggtgtttgactacaccaagcacccctcc
aaaccagatgcttctggagagtgtcaccctgatctgcgtctcagaggtcatcagaaagaa
ggctacggtctctcctggaatcccaatctgtccggctctctccttagcgcgtcagatgac
catacaatctgtctgtgggacataagcgccgtgccaaaggaggggaagatagtggaggcg
aagacgatcttcaccggtcacacggccgtggtggaagacgtctcctggcacttgctccac
gagtcgctctttggatctgtagccgacgaccagaagctcatgatttgggacactcgctca
aacaacacctccaaacccagccacgcagtcgacgcccacacagcagaggtcaactgtttg
tcgttcaacccctacagcgagttcatcctcgcctccggctctgcagacaagactgtggct
ctttgggacttaagaaacttgaaactgaagctgcattccttcgagtcacacaaggatgag
atcttccaggttcagtggtcacctcataatgagaccatactggcatccagtggaacagac
cgccgcctcaacgtctgggatctcagtaaaatcggagaggagcagtcaccagaagatgca
gaggacggcccccccgagcttctgtttatccacggaggccacaccgctaagatctctgac
ttctcctggaatcccaacgagccctgggtcatctgctcggtgtctgaagacaacatcatg
caagtctggcaaatggctgagaacatctacaacgatgaagaccccgagggttcgacagac
cccgaggccacagcgtaa

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