Anoplopoma fimbria (sablefish): 129097076
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Entry
129097076 CDS
T09102
Name
(RefSeq) polyadenylate-binding protein 1A-like
KO
K13126
polyadenylate-binding protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129097076
09123 Folding, sorting and degradation
03018 RNA degradation
129097076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129097076
03041 Spliceosome [BR:
afb03041
]
129097076
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129097076
mRNA cycle factors
Stress granule specific factors
129097076
Spliceosome [BR:
afb03041
]
Complex C
Other components
Complex C specific factors
129097076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
RRM_3
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
129097076
NCBI-ProteinID:
XP_054461760
LinkDB
All DBs
Position
10:6265897..6274147
Genome browser
AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYVKNFGEDMDDEKLREVFSKFGNAMSIRVMTDDNGKSRGFGFVSFDR
HEDAQKAVDELNGKEFNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFTPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYQAAGQMAQLRPSPRWATQGVRPQHFQNMQGAMRPSAPRPQSFGAMRPASQVPRMMST
QRVASQTMGPRPVSAAAAAGAPLRGVPQYKYAAGVRNPQQHIPAQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSAGVPNV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagtgctcccagttaccccatggcttccctttacgtcggggatctgcatcaa
gatgtgaccgaggccatgctgtacgagaaattcagcccagccggagctatcctctcgatc
cgggtctgcagggacatgatcacccggcgttcccttggatacgcctatgtcaacttccaa
cagccggcggacgccgagcgtgcactggacaccatgaactttgatgtgatcaaggggcgg
cctgtgcgcatcatgtggtcgcagcgtgatccatcactgagaaagagcggtgttggaaac
atcttcattaagaatcttgacaagtccatcgacaacaaggctctatacgacaccttctct
gcgttcggcaacatcctctcgtgcaaggtggtttgtgacgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaagcagccgaacgagctattgagaaaatgaatggc
atgctgctcaatgaccgaaaagtattcgtgggtcgcttcaaatctcgcaaagagcgcgag
gctgagctgggtgcccgagccaaagaattcacaaatgtctatgtcaaaaatttcggtgaa
gacatggatgatgagaagctgagggaagtcttcagtaaattcggaaacgcaatgagtatc
cgcgtcatgaccgatgacaatggaaagtctcgaggcttcgggtttgtcagctttgatagg
cacgaggacgcccagaaggcagtggatgagctgaacgggaaggagtttaacggcaagctc
atctatgtcggccgtgcccagaagaaggtggagcgacagacggagctcaagcgcaaattt
gagcaaatgaaacaagaccgcatgactcgctaccagggtgtcaacttgtacgtgaaaaac
cttgatgatgggattgacgatgaacgtctgcgaaaagagttcacaccattcggcaccata
accagtgccaaggtcatgatggagggggggcgcagcaaaggtttcggttttgtctgcttc
tcgtccccagaggaggccacaaaagctgtgacggagatgaatggacgcatcgtagcaacc
aagccattgtatgtggccctggcccagcggaaagaggagcgtcaagcccacctgaccaac
cagtacatgcagcgcatggccagtgtgcgtgcagtgccaaacccggtcatcaatccctac
caaccggccccgccctctggctacttcatggcagccatacctcaggcccagaaccgtgcc
gcttactaccaagctgctgggcagatggcccagctccgcccgagcccacgctgggctacc
caaggtgtcaggccacaacacttccagaacatgcaaggtgctatgcgtccctcagcacca
cgtcctcagtccttcggtgccatgcggccggcctcccaggtgccccgcatgatgtccacc
cagcgtgtcgcatctcagacaatgggcccccgaccagtcagcgcagctgctgcagcaggc
gctcctctgcgtggagtccctcagtacaaatatgccgcaggagtccgtaatccccagcag
cacatacctgctcagccacaagtccccatgcagcagcctgctgtccatgttcagggacag
gagcctctgacagcctccatgctggccgctgctccaccacaggaacagaagcagatgctg
ggtgagcgtcttttcccactaatccagaacatgcacccaagcctggcagggaagatcact
ggcatgctgctggaaattgacaactcagagttactccacatgctggagtccccagagtct
ctccgctcaaaggtggatgaggcagtggctgtgcttcaagctcaccaggcaaaggaggcc
gcccagaagactgtgacaaactcagctggtgtcccgaatgtctga
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