Anoplopoma fimbria (sablefish): 129097408
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Entry
129097408 CDS
T09102
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129097408 (trim71)
04121 Ubiquitin system [BR:
afb04121
]
129097408 (trim71)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129097408 (trim71)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129097408 (trim71)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129097408 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-B_box_Trim66
zf-RING_5
zf-C3HC4
zf-RING_2
Ig_GEX2_N
Motif
Other DBs
NCBI-GeneID:
129097408
NCBI-ProteinID:
XP_054462228
LinkDB
All DBs
Position
10:18693107..18720791
Genome browser
AA seq
846 aa
AA seq
DB search
MASFPDSDLQTCPLCKELCGSSAPISSSSSTSSSSSHTSSSSSQTTRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLRCPTCDQKVCISEAGVDSLPSSNFLFSNLLDVVVSSSEEQIQNKN
GLHHHHHNNHHQHQQQQHLRGGLGGGSSGFQHLHGGLLHQSHLGEPQCSSCDEENPATSH
CLDCQEYLCDNCVRAHQRVRLTKDHFIERLGENLHLGRVNVNSNPGQPGVSVSLAQSLQN
NFALLSLFQDQMSFCQHHDNEIFLFFCESCSVPICRECSVGRHMGHTFVYLQDAVQDCRA
ITIQLLADAQQGRQAVQLSMEKVQAMAEQVEIKAKVVQTEVKALVLKHKKALEERECELL
WKVEKIRQVKAKSLYLQVEKLHQSLTKLDSTIAAVSQVLDEGRHLDVLLARERMLTQIHE
LKALRGLLQAQEDDRFMFTPPDQALYIAVQSMGLISSGAFAPVTKAHGEGLKTALRGKPS
SFTVIGYDHDGEPRLSGGDAVSSIVMSVPDGNLSSAEVTDHQNGSYTVGYLPKSEGEHLV
SVLVCNQHIQGSPFKVMVKSGRSYGTLGSQVAAFGCEGEGDGQLCRPWGISVDKEGYVVV
ADRSNNRIQIFKPCGAFHHKFGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTF
EGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRVQLFGPDGSFLNKYGFEGA
LWKHFDSPRGVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAV
DLENRIIVADSRNHRVQVFEPNGNFLCKFGTQGSGFGQMDRPSGVAVTPDGVIVVVDFGN
NRIIKF
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtttccagactcggacctgcagacctgcccgctctgcaaggagctgtgcggc
tcctcggctcccatttcctccagctcctccacctcgtcgtcctcctcgcacacctcgtcc
tcctccagccagaccaccaggaggctccacgtcctgccctgcctccacgccttctgcagg
cagtgcctcgagggccaacgcagcccaggtgaccccctgaagctgcggtgccccacctgc
gaccagaaggtgtgcatctccgaggccggagtggactccctgccttcctccaacttcctc
ttcagcaacctgctggacgtggtggtgagcagctccgaggagcagattcagaacaagaac
ggcctacaccaccaccaccacaacaaccaccaccaacaccagcagcagcagcacctccgg
ggaggtttgggcggaggttcctcaggcttccaacaccttcacgggggcctcctgcaccag
agccacctgggagagcctcagtgcagctcctgcgatgaggagaacccggccacctcccac
tgcctcgactgccaggagtacctgtgtgacaactgcgtgcgggctcaccagagggtgagg
ctgaccaaggaccacttcatcgagcgcctgggggagaacctccacctgggccgggtcaac
gtcaacagcaacccgggccagccgggggtgtcggtgtccctcgcccagtctctgcagaac
aacttcgccctgctgtccctgttccaggaccagatgagcttctgccagcaccatgacaac
gagatatttctgttcttctgtgaatcctgctcggtgccgatctgtagggagtgcagtgtt
ggccgtcatatgggacacaccttcgtttatctgcaggacgctgtacaggactgcagggcc
atcaccatccagctgctggccgacgcacaacaaggacgtcaggctgtgcagctaagcatg
gagaaggtccaggccatggcagagcaggtggagatcaaagccaaggtggtgcagactgag
gtgaaggcccttgtgctcaagcacaagaaagcgctggaggagagggagtgtgaactactg
tggaaggtggagaagatccgtcaggtgaaggccaagtctctgtacctgcaggtggagaaa
ctgcaccagagtctgaccaagttggacagcaccatcgccgccgtcagccaggtgctggac
gagggccgccacctcgacgtgctgctggccagggagcgaatgctcacacagatccacgaa
ctcaaggctctgaggggcctgctgcaggcgcaggaggacgaccgcttcatgttcacgcct
ccggaccaggctctctacatagccgtccagtccatgggcctcatcagcagcggagccttc
gccccggtcaccaaagcccacggtgagggtctgaaaactgctcttcgtggcaaaccctcc
tccttcaccgtgattggatacgaccacgacggcgagccgcgtctctcgggcggggacgcg
gtgtcttcaatagtcatgtcggtcccagacgggaacctgtcctccgccgaggtaacggac
caccagaacggctcgtacactgtgggctacctgcctaaaagtgagggggagcacctggtg
tcggtgctggtgtgtaaccagcacatccagggcagccccttcaaggtgatggtgaagtcg
gggcggagctatggcaccctgggctcacaggtggcggccttcgggtgcgagggtgaggga
gacgggcagctgtgtcgaccgtggggaatcagcgtggacaaggagggatacgtggtggtg
gccgatcgcagcaacaaccgcatacagatatttaagccctgcggtgcgttccaccataag
tttggcacgctgggttctcggcccggtcagtttgatcgtccagcgggggttgcgtgtgac
agtcagaggcgaatcattgtggctgataaggacaatcaccgtgtgcaggtgtttactttc
gagggccagttcctgctgaagtttggggaaaagggtaccaagaatgggcagttcaactat
ccctgggatgtggctgtcaactccgaggggaagatcctggtctcggacacccggaaccac
cgggtgcagctctttggccccgatggctctttcctcaacaagtacggcttcgagggggcc
ctgtggaaacactttgactctcccagaggagtggcctttaaccacgaggaccacctggtg
gtgaccgacttcaacaaccaccggctcctggtcatccggccggactgccagtcggcccgc
ttcctgggctccgagggcaccgggaacgggcagttcctgcggccccagggcgtcgccgtg
gacctggagaaccgcatcatcgtggccgactcccgcaaccaccgggtccaggtgttcgag
cccaacgggaacttcttatgcaaatttggcacacaggggagtggcttcggacagatggac
cgcccctccggtgtggctgtgacgcccgacggggtcattgtggtcgttgactttggaaat
aatcgcatcatcaagttctaa
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