Anoplopoma fimbria (sablefish): 129097541
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Entry
129097541 CDS
T09102
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129097541 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129097541 (exosc7)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129097541 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
129097541 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129097541
NCBI-ProteinID:
XP_054462407
LinkDB
All DBs
Position
10:9391074..9393743
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AA seq
291 aa
AA seq
DB search
MATVQVSEAEKVYILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTAVLV
GIKADIGKPRPMVPNEGYLEFFVDCSANATPEFEGRGGDELGTELSNTLYKVFNNKHSVD
LKSLCICAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPKVHISADEEGAKEI
ELSDDPYDCMRLDVENVPCIVTLCKVGHRHVVDVTLQEKACSVASLIISVTHKGTVTCTR
KVGGGSLDPESIFEMTEAGKRVGKALHAPLMKLLRQEESLGKTRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggtacaagttagcgaggctgaaaaagtgtacatcctacacgggatacgagat
gacttacgagtggacggaagaggctgtgaggactacagacacatggaaatagagactgat
gtggtgtccaacacagacggctctgccaaagtcacactgggccacacagcggttcttgtt
gggattaaagctgacattggaaaaccgaggcccatggtgccaaatgaaggctacttggaa
ttctttgtagactgttcggccaatgcaaccccagagtttgagggcagaggaggcgacgag
ctggggacggagctgagtaacactctctacaaagtcttcaacaacaaacacagcgtggac
ctgaagagcctctgcatctgtgcaggagaacactgctgggtcctctatgtggatgtgctg
ctcctgcagtgtgatggaaacctgtacgatgccatctcagtagctatcaaggcagctctc
ttcaacacaaagattcccaaagtacacatatcagctgacgaggaaggagccaaggaaata
gagctgtccgatgacccgtatgattgcatgagactcgatgtagaaaacgttccttgtata
gtgacgttgtgcaaggtgggccacaggcacgtagtggacgtgactctgcaggagaaggcc
tgctccgtggcgagcctgatcatctctgtcacacacaagggcacggtcacctgcaccagg
aaggtgggcggaggcagcctggatccagagagtatctttgaaatgacagaggcaggtaaa
cgtgtcgggaaggcccttcatgctccgctcatgaagctgctgcggcaggaggagagtttg
ggaaagacgcgacagaaagttggcttccttggttaa
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