Anoplopoma fimbria (sablefish): 129097578
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Entry
129097578 CDS
T09102
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03250
Viral life cycle - HIV-1
afb03272
Virion - Hepatitis viruses
afb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129097578 (pdcd6ip)
03272 Virion - Hepatitis viruses
129097578 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129097578 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129097578 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129097578 (pdcd6ip)
Membrane trafficking [BR:
afb04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
129097578 (pdcd6ip)
Exosome [BR:
afb04147
]
Exosomal proteins
Proteins found in most exosomes
129097578 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2226
COG3_N
Motif
Other DBs
NCBI-GeneID:
129097578
NCBI-ProteinID:
XP_054462447
LinkDB
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Position
10:complement(4205449..4219848)
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AA seq
875 aa
AA seq
DB search
MATFISVPLKKSSEVDLVKPLSKFITVSYPAGEEQGEYIRAVEELNKLRKNALGRPLEKH
ESALELLLRYYDQLCAVEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEKT
CVLFNAAALASQIASEQNLDSDEGLKAAAKYYQLASGAFGHIKDTVLSALNREPTMDIAP
ETVGTLKLIMLAQAQEVFFLKATSDRMKDAVIAKLANQAADYYGDACKQCQYKDNLPKYF
YFQEVLSVLAAKHTIMQANAELHQSVMSKQKKRFGEEIARLQRSAELVKTVASGYDEYVS
VKDLSEKINRALVAAKKDNDFIYHDRVPEVKDLEQIGKAVLVKSTPITAPLSQKFADLFE
KMVPMVVQQSMSIYTQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IAEKARAVVQLGGLQSIEQLIRDLPELLTRNREILDESLKMLDDEETTDNELRTKFNQRW
NRTPSGDLYKPLRAEGASFRNILDKAVQADQVVRDRYTTHCDMIALLCKPENELNAAIPS
ANPTKTLQGSEVVNVLRSQLAQLDEMKKERETLEGEIKAVTFDMSISFLTALGQDGAINE
EQMSLSQLDQLYGAYNQRVQTTVRTQEELLGQVQTSHQGFSSLKQSNNEANQREEVLKKL
ASAHDSYVEISNNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKDLQQSIARE
PSAPSFNVPAYQTNPAAPAGGPTPAPRTVFQPQQPQAKPQPPARPPPPSVTPQAASTTPV
NPQPTGPPNSNPPPVAPPSQAQGPPYPSYQGYPGYFQMPGYNPYAYGQYNMPNMPYMPYQ
QAPGQGGYPAAPPPGQPYPGYPQQPPQQQPYYPQP
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtttatttcagtcccgttaaagaagtcatccgaggtggacctggtgaaacca
ctctccaaatttatcacagtttcctaccctgcgggagaggagcagggggagtacatccgt
gcggtggaggagttgaacaagctccgcaagaacgcgttgggaaggccgctggagaaacac
gaaagcgccctggagctgctgctcagatactatgaccaactgtgtgcggttgagcccaag
tttcccttctctgagaaccagctctgcttaaccttcacatggaaggatgcctttgataaa
ggatcgctgttcggtggctcggtgaagctcgctttggccagtttaggctacgagaagaca
tgtgtgttgttcaacgcagcagcgttggccagtcagatcgcctccgagcagaacctggac
agcgatgagggactgaaggctgcagccaaatactatcagctggctagcggagcgtttggt
cacatcaaggacacagtgctgtcagcgctgaacagggagcccaccatggacatcgctccc
gagactgtgggaaccttgaaactcatcatgctggcccaggcccaggaggtcttcttcctc
aaagccacctcagacaggatgaaagatgctgtcattgcaaagctggccaatcaggcggca
gattactacggcgatgcctgcaagcagtgccagtacaaagacaaccttcccaagtatttt
tattttcaggaagtgctgtcggtgctggcggccaagcacaccatcatgcaagccaatgcc
gagctgcaccagagcgtcatgtccaagcagaagaagcgctttggagaggagatagctcgc
ctgcagcgctcagcagagttggtgaagacggtggcgtctggttacgacgaatatgtgagc
gtcaaggatctaagtgagaagatcaaccgagccctcgttgcagccaaaaaagacaatgac
tttatctaccacgaccgcgtgcctgaggtcaaggatctggaacagatcggcaaggcggtg
cttgtcaaatctacccccatcacagctccactcagccagaaatttgcagacttgtttgag
aagatggtccccatggtggtgcagcagtccatgagcatttacacccagaggaaggctgag
actgtaaacagactggtgggaacgatgagggaggccaccaatctctgcaatggggttttg
gcatccctaaacctgccagctgctctggaggacctgtcaggagattctatcccacaatcc
attgctgagaaggcccgagccgtcgtgcagctgggaggactgcagagcatcgagcagcta
atcagagatctgcccgagcttctcacccgcaacagagagatcctggatgagtctctgaag
atgctggacgacgaagagacgacagacaacgagctgagaaccaagttcaaccagcgctgg
aacagaaccccctctggagacctctacaagccccttcgcgcagagggcgctagcttccgc
aacatcttggacaaggccgtacaagcggaccaggtggtgagggaccgctacaccacccac
tgtgacatgatcgccctgctgtgtaaaccggagaacgagctcaatgctgccatcccctcc
gccaacccgaccaagacactgcagggcagtgaggtggtgaacgtgctgcgctcccagctc
gcccagctggacgagatgaagaaggagagggagaccctggagggagagatcaaggccgtg
accttcgacatgtctatctccttcctgacggcgctcggccaggatggggccatcaatgag
gagcagatgtcactctcccagctcgaccagttgtacggcgcctacaaccagcgggtacag
accaccgtccgcacgcaggaagagctgctgggacaagttcagacatcccaccaggggttc
agcagtctgaagcagtccaacaacgaagccaaccagagggaggaggtcctgaagaagctg
gcttcagcccatgacagctacgttgagatcagcaacaacctgcgcgaaggcaccaagttc
tacaacgacttgacggaaatcctgcttaagttccagaacaaatgcagcgacatcgttttt
gctcgcaagacagagcgggatgaactacttaaggacctgcagcagagcatcgcccgagag
cccagcgctccatccttcaacgtccctgcctatcagactaacccagctgcccctgctggt
ggcccaacgcctgcacccaggaccgtctttcagcctcaacaaccccaggcgaagccccag
ccaccagccaggcctcctccaccgagcgtcacccctcaagcagcctccaccactcccgtc
aatccacaaccaactggccctcccaacagcaacccaccacctgtggccccaccatcccag
gcccagggaccaccttaccccagctatcaaggctatccagggtacttccagatgcccggc
tacaacccctatgcttacggacagtacaacatgcccaacatgccctacatgccctatcag
caggctccaggacagggaggctacccagcagcccctcctcccggacagccctaccctggc
tacccccagcaaccccctcagcagcagccctactaccctcagccataa
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