Anoplopoma fimbria (sablefish): 129097747
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Entry
129097747 CDS
T09102
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129097747 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129097747 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129097747 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afb00535
]
129097747 (col9a2)
Proteoglycans [BR:
afb00535
]
Extracellular matrix (ECM) proteoglycans
Others
129097747 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129097747
NCBI-ProteinID:
XP_054462622
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All DBs
Position
10:788012..803923
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AA seq
691 aa
AA seq
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MAALSALLKTWVLLQTLCLALAQVRGPPGPQGQAGPPGPSGTPGSDGIDGDKGPPGPPGP
PGLKGEPGEPGTDGVPGENGIDGLIGAKGDRGPFGNPGPKGKPGPSGEPGLPGPGLPGLA
GAPGPIGLPGEIGTSGTKGIMGPPGAPGLPGPPGKPGPPGKFIGVEEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRSGVLGEPGSIGKSGPKGEVGISGEQGIPGPSGPMGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPQGPPGEAGDKGDKGGRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGSPGQAGRPGPSGPQGLAGLPGSPGTKGGPGAKGEPGPRGHV
GMSGASGPLGEPGVPGEAGMEGVPGPKGDRGQRGEVGPQGIVGKAGNKGERGPMGVPGAQ
GLSGTKADKGFQGKVGSKGDDGDPGVEGLAGEKGEKGLSGEPGPKGQHGIRGESGHNGPT
GDSGKPGDQGPPGLPGPRGLYGERGVPGMPGIQGSSGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPSGSPGPQGQHGLPGARGIPGMIGGPGQIGNTGLKGKR
GLKGDRGDPGKPHPGQPGPPGIPGPAGVDGVARNGRHGERGPQGSAGEAGHPGKAGPTGL
PGYCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttactgaagacctgggtattactgcagaccctgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggccaagccggcccaccaggcccctct
ggcactcctgggtcagacggcattgatggagacaaaggaccacctgggccccctggtcca
ccaggactgaagggagagccaggagagccaggtactgatggagtaccaggagagaatgga
attgatggtttgattggagcaaagggtgatcgaggtccttttggaaaccccgggcctaag
ggtaaacctggaccaagtggagagcctggacttcctggacccggccttccaggactggcg
ggcgctccagggccaattggtcttccaggtgaaattggaacatctggtacaaagggtatc
atgggaccacctggagctccaggactacctggacctcctggcaagccaggtcctccaggg
aagttcattggtgtagaagagggaagtgcagacttccagtgtccgcttaactgtccagca
ggacctaaaggcccccagggactgcagggagtcaagggacacaaaggacgttctggtgtt
ctcggagagcctggaagcataggaaaatcgggtcccaagggagaagtgggcatctctggg
gaacagggaatcccaggaccttcgggtccgatgggtctgagaggttatccaggaatgatg
ggtcctaaaggtgaagcagggcctcgtggctacaagggcatcaacggacctgtaggaata
cctgggcctcctggtgaggaggggcctcagggaccacccggagaggcaggagacaaggga
gacaaaggcggccgaggtatccagggcccacagggcgcggttggcaaaaagggagagaat
ggtctgccgggtattgatggcaaagatggcacacctggtattcctggaatcaagggcagc
cctggccaagctggcaggcctggtccttctggtcctcagggactagcgggattgcctggc
agcccagggacaaaaggtggacctggagctaagggcgagcctggacctaggggtcacgtt
ggcatgtctggtgcctctggacctctgggtgagcctggtgttcctggtgaggctggtatg
gaaggagttcccggacccaagggtgacagaggccagcggggagaggttgggccacaggga
attgtcggcaaggctggaaacaaaggagagagaggaccaatgggcgttccaggtgcccag
gggcttagtggaaccaaggcagacaagggcttccaaggaaaagttgggtcaaagggagac
gatggtgaccccggtgttgagggattggctggcgagaaaggtgaaaagggtttgtctggt
gaacctgggccgaaaggacagcacggaatcaggggtgaatccggacacaatggacccact
ggagactctggtaaacctggagaccagggaccaccaggactgcctggtcctaggggactc
tatggcgagcgaggagtacctggcatgccaggcattcaggggtcctcaggacgcgatgca
tctgaccagcatattattgaagtggtgttgaagatgttgcaggagaggctagctgctgta
gcagtgagtgccaagagggctgtgcttggtggagcaggtgtaatgggacctcctgggccc
cctggaccctcggggtcacctggccctcaggggcaacatggtttacctggtgcccgtggc
attcctggcatgattggaggacctggacagattggaaacacaggacttaaaggaaagaga
gggttaaagggagacagaggagatcctggtaaaccccatccaggacaaccaggaccccca
ggaataccaggtcctgctggtgttgatggcgtggcccggaacggtaggcacggcgagaga
ggacctcagggatcagccggagaggcaggtcatcccggcaaggcgggtccgacaggtctc
ccaggctattgcgaggccgcgatgtgtttagctgcgtcagcatacacatccccgagacta
caggaggcgggaacaatcaaaggacccaatgtttag
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