Anoplopoma fimbria (sablefish): 129097796
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Entry
129097796 CDS
T09102
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03022
Basal transcription factors
afb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129097796 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
129097796 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129097796 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129097796 (gtf2h4)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129097796 (gtf2h4)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129097796 (gtf2h4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
129097796
NCBI-ProteinID:
XP_054462695
LinkDB
All DBs
Position
10:complement(15505742..15523403)
Genome browser
AA seq
462 aa
AA seq
DB search
MKLRVQLQCKNLHEYLRELSPEVLDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDQPLP
QAALALWVKVDSQKDHDECVSVLAGLRLWHSQQLQGGLQGYILNPVFKDNLRIALLGGGK
AWADEGSSLGPDRHARDIESLDRYAMERWEVILQFMVGSPCAAVSQDLAQLLVQAGLMKS
EPGEAPYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTSSSSSSSSSSIPV
TGDTGFIVVETNYRIYAYTDSELQIALVALFSEMLYRFPNVVVAQVTRESVQQAIANGIT
AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQADFEV
LRDRAQGLGCLVWQDVAQRVMVVSPHGHSEVKRFWKRQKTNT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagctacgtgtccagctgcagtgtaagaatctgcatgaatacctgagagagctgagt
cctgaggttttggacagactgtacaaccatccagcaacatgtctggctgtctacagggaa
ctcccctctctggccaagaattatgtgatgcgtatgctgttcctggatcagcctctaccc
caagcagcgctggcattgtgggtgaaagtagacagtcagaaggatcatgatgaatgtgtg
tcggtgttggcaggactccgcctctggcacagtcagcagctgcagggtggtctgcaggga
tacattttaaatccagtgttcaaagacaacctgaggatagctctgctgggcgggggcaaa
gcatgggcagatgagggcagctctctgggtccggaccgccacgcacgggacattgagagt
ctggaccgctacgccatggagcgctgggaggtcatcctgcagttcatggtgggttctccc
tgtgctgctgtcagtcaggacttggctcagctgctggttcaagcaggcctcatgaaaagt
gagccaggagaggcgccatacatcacgtcagctggtttccagttcctcctactggacaca
gcctctcagctgtggtacttcaccctgcagtacctcaaaactgctcagtccagagggatg
gacctggtcgagatcttgtctttcttgttccagctcagtttctctactcttggcagagat
tactcagtggagggcatgagcgagtctttactcaccttcctgcagcacctgcgggagttt
ggacttgtcttccagaggaagaggaagtcgaggcggtactaccccaccagactagccatc
actctggctgcaggagtcacttcctcctcctcctcctcctcctcctcttccatccctgtt
actggagacacaggcttcattgtggtggaaaccaattatcgtatctacgcctacacagac
tcagaacttcagatcgctctggtggctctcttcagtgaaatgctgtatcgcttccccaac
gtagtggtggctcaggtaacacgggagtcagtacaacaggccatcgccaacggcatcaca
gcacaacagattatccactttctaaggaccagagctcaccctgtcatgctcaaacagact
ccagtgctgccaccaactataacggatcagattcgactgtgggagctagagagagatcga
ctgcagttcacagagggagtgctctataatcagttcctctcccaggctgactttgaggtg
ctgcgagacagagctcagggtctgggctgtctggtgtggcaggatgtggctcaacgggtg
atggtggtgtcaccgcacggacacagtgaggtcaagaggttctggaaacgccagaagacg
aacacgtaa
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