Anoplopoma fimbria (sablefish): 129097900
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Entry
129097900 CDS
T09102
Symbol
smarca4a
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129097900 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129097900 (smarca4a)
03036 Chromosome and associated proteins [BR:
afb03036
]
129097900 (smarca4a)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129097900 (smarca4a)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
129097900 (smarca4a)
Chromatin remodeling factors
BAF complex
129097900 (smarca4a)
PBAF complex
129097900 (smarca4a)
GBAF(ncBAF) complex
129097900 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
129097900
NCBI-ProteinID:
XP_054462770
LinkDB
All DBs
Position
11:22288361..22304199
Genome browser
AA seq
1642 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQENMHQMHKPMEAMHEKGMPDDPRYAQMKGMAMRPGGHPGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPGGPSGPVAGPMEGSGDPNQGMGQPNRGGPQGPGG
PGPAVGGPGVAGGPAPFNQNQLHQLRAQIMAYKMLARSQPLPEHLQMAVQGKRPMPGMQQ
PPMPNMPPSVGPGVGPGAGPGPAQANYNRPHGMVGPNMAPPGPAGVPPGMQGPPTNGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPXASPVMPPQTQSPGQPAQPPPM
MLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIE
LKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKK
KKKKKPETMEGGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMEAPKAGQLETWL
EMNPGYEVAPRSDSEESGSEEEEEEDEEEEQPHSSATQADEKKKIPDPDCEEVSEVDVLH
IIEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTEKVDKQSSLLINGQLKQYQIKGLEWLV
SLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPFLIIVPLSTLSNWVYEFDKWA
PSVVKVSYKGSPAARRAFVPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRM
KNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAP
FAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRV
LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGYS
GGVVSGPDLYRSSGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRSFKYLRL
DGTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIYDSDWNPHQDLQA
QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERRAF
LQAILEHEEQDEVGAQGGCRPRGAWEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRRE
DARNPKRKPRLMEEDDMPSWILKDDAEVERLTCEEEEEKIFGRGSRQRKEVDYSDSLTEK
QWLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGPATPSSSSGRGRDKDDDVKKAKKRG
RPPAEKLSPNPMSLTKKMKKIVDAVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKP
VDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKI
EKEEESEGEDSEEEEDDLDEGSESEPRSVKVKIKLSRKEKGDRGGKGQRRRGRGSRAKPV
VSDDDSEDEQEEEHSASGSEED
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcggcctggtccctccccaggccca
gggccatctccgggaggcatgatgggcccgagccccggtccctcacccggctcggcccat
agcatgatggggcctagcccaggacctcctggatctggacacccccaccctccacaggga
ccatcaggatatcctcaggagaacatgcaccagatgcacaaacccatggaagccatgcat
gagaaggggatgcccgatgacccccgctatgcccagatgaagggcatggccatgagacca
ggggggcaccctgggatgggaccccctccaagcccaatggaccaacattctcaaggttac
ccctctccattgggaggctctgagcacgcacccagccccgtcccagccaacggccctccc
tctggccctatgatgcccgggggtccctccggccctgtggctggccctatggagggcagc
ggggacccgaaccagggaatgggtcaacctaaccgcggcggtccccagggtccaggcgga
cccggccctgcagtagggggacccggtgtggcaggtgggcccgcgcctttcaaccagaac
cagttgcaccaactcagggctcagatcatggcctacaagatgctggcacgcagtcagccc
ctaccggagcacctgcagatggccgtgcaggggaagaggcccatgccggggatgcagcaa
ccgccgatgcccaacatgccgccctccgtggggccgggtgtcgggcctggagctggtccg
ggacccgctcaggccaactacaacagaccacacggcatggtaggtcctaatatggcgcct
cctggacctgcaggagttccccctggtatgcaaggcccgcctaccaacggacccccaaaa
tcatggcctgaaggaccaatggtgaatgccgctgccccgtccaaccctcctcagaagctg
attccacctcagcccactggcaggccctctcccgctcccccctccgttcccccgnccgcc
tccccagtgatgccccctcagacgcagtcccccggacagcccgcccagccccctcccatg
atgcttcatcagaagcagaaccgcataacccccatccagaagccccgcgggctggacccg
gtggagatcctgcaggagagagagtacaggctacaggcccgtattgctcaccgtatccag
gagcttgagaacctgcctggctctctagccggtgacctgcgcactaaggccaccatcgag
ctcaaggccctgaggctgcttaacttccagagacagctgcgtcaggaggtggtggtctgc
atgcgccgtgacactgctctggaaactgccctcaacgccaaggcctacaagcgcagtaaa
cggcagtcgctgcgtgaagcccgcatcaccgagaagctcgagaaacagcagaagatcgaa
caggaaaggaaacgtcgccagaaacaccaggaatacctcaacagcatcctgcagcacgcc
aaggatttcaaggagtaccaccgctccatcaccgcgaagctccagaaggccaccaaagcc
gtcgccacctaccatgccaacaccgagcgcgagcagaagaaagagaatgagcgcattgaa
aaggagagaatgcggaggctgatggctgaagatgaagaaggctaccgtaaacttatcgac
cagaagaaagacaagcgtctggcctacctgctgcagcagacggacgagtacgtggccaac
ctcaccgagctggtgcgcgctcacaaagctgtgcaagctctcaaagagaagaaaaagaag
aagaaaaagaagaagccggagactatggagggtggcgctcctgccctgggacccgatgga
gagcctttagatgagaccagtcaaatgagcgacctaccggtgaaggtcatccacgtggac
agtgggaagatcctgaccggaatggaagcaccgaaggctggccagctggagacctggctg
gaaatgaacccaggatacgaagtagctccgcgctctgacagcgaagaaagcggttcagaa
gaagaggaagaggaggatgaagaagaggagcaacctcattcctccgcaactcaagcagat
gagaagaagaagattcccgatcctgactgcgaagaagtgtctgaagtggatgtcctgcac
atcatcgagcacgctaagcaggacgtagatgatgagtacggtaatgcgagcttcaaccga
ggcctgcagtcctactacgctgtggctcacgccgtcaccgagaaggttgataaacagtcc
tcgctgctgatcaatgggcagctcaagcaataccagatcaaaggtttggagtggctggtg
tcgctttacaacaacaacttgaatggcatcctggcagatgagatgggtctgggcaaaacc
atccagaccatcgccctcatcacttacctcatggagaacaagcgcctcaacgggcccttc
ctcatcatagtacctctctcaactttatcaaactgggtctacgagtttgataagtgggcc
ccatctgttgtgaaagtctcctacaaggggtctccagctgctcgccgtgcgttcgttccg
atcttgcgcagcggcaagttcaacgtgctgctcaccacgtacgagtatattatcaaagac
aagcaagtgctagctaagcttcgctggaagtacatgatcgtggacgagggccatcgtatg
aagaaccatcactgtaagctgacccaggtcctgaacactcactacttggccccgcgccgc
gtgctgctcaccggcaccccgctgcagaacaagctgcccgagctctgggccctgctcaac
ttcctgctgcccaccatcttcaagagctgcaccacattcgaacagtggttcaacgccccc
ttcgccatgaccggagagaaggttgacctgaatgaagaagagaccattctgatcattcga
cgtttacacaaggtgctcaggccgttcctgctgcgccgactcaagaaagaagtcgaggct
cagctgccagagaaggtggagtacgtgattaaatgtgacatgtcagccctacagagggtt
ttgtacagacacatgcaggccaagggagtgttgctcacagacgggtcagaaaaagacaag
aagggtaaaggtggcacgaagaccctgatgaacactatcatgcaactgagaaagatctgc
aaccacccctacatgttccagcacattgaggagtctttctccgagcatctgggctactct
ggtggagtcgtgagtggccctgacctctaccgctcctctgggaagtttgagctgctggac
cgcatcctgcccaagctgagggccaccaaccacaaagtgctgctcttctgtcaaatgacc
acactcatgaccatcatggaggactactttgcctaccgcagcttcaagtacctgcgtctg
gacggaaccaccaaggcagaggaccgtggcatgctgctgaagacattcaacgacccggcc
tctgagtactttgtgttcctgctcagcaccagggcaggaggcctgggcctcaacctgcag
tctgctgacacagtcatcatctatgacagtgactggaacccacatcaggacttgcaggcc
caggacagagcccaccgcatcggtcagcagaacgaagtgcgcgtgctccgcctctgcacc
gtcaacagcgtggaggaaaagatcctggcggcggccaagtacaagctgaacgtggaccag
aaggtcatccaggccggcatgttcgaccagaagtcctccggctgcgaacgtcgggccttc
ttgcaggccatcctggagcacgaggaacaggacgaggtcggggcccaaggaggctgccgt
cctaggggggcatgggaggaggacgaagtgcccgatgacgagactgtcaatcagatgata
gccagaagtgaagaggagtttgaacagttcatgcgcatggatctagacagacgccgcgag
gatgcccgcaaccctaagaggaagccccgtctgatggaggaggacgatatgcccagctgg
attttgaaagacgacgctgaggttgagaggctaacttgcgaagaggaggaggagaagatc
ttcggcagaggatcccgccagcgcaaggaggtggactacagcgactcgctcactgagaaa
cagtggctcaaggccatagaggaaggtaatctagaggacatcgaggaggaagtgcgccac
aaaaagaccaccagaaagcgcaagagggaccgcgaccacgacggcccggccacaccgagc
tccagcagcggccgcgggcgggacaaggacgacgacgtgaagaaagcgaagaaacgtggt
cgcccgcctgctgagaagctctctcccaaccctatgtccctcaccaagaagatgaagaag
attgttgatgcagtcatcaaatataaggacggtagtaacgggcgacagctgagcgaggtc
ttcatccagctgccttctcgcaaggagctgcccgagtactacgagctcatccgcaaacca
gtggacttcagaaagatcaaggagaggatccggagccacaagtaccgcagcctgaacgac
ctggagaaggatgtgatgctgctgtgtcaaaatgcccagactttcaacctggaggggtct
ctgatctatgaggactccattgtgctgcagtctgtcttcaccagtgtgagacagaagatt
gagaaggaggaggagagcgaaggagaggacagtgaggaggaggaggatgacctagacgaa
ggctctgagtctgaacctcgttcggtgaaggtgaagatcaagctgagccggaaagaaaaa
ggggatcgagggggaaaaggacaacgacggaggggccgtggttccagggctaaacctgtg
gtgagcgacgatgacagcgaggatgaacaggaagaggagcattcggccagtggcagcgag
gaggactga
DBGET
integrated database retrieval system
