Anoplopoma fimbria (sablefish): 129097904
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Entry
129097904 CDS
T09102
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129097904 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129097904 (ddx42)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129097904 (ddx42)
Spliceosome [BR:
afb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129097904 (ddx42)
Complex B
129097904 (ddx42)
Complex C
U2 SnRNP specific factors
129097904 (ddx42)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
129097904
NCBI-ProteinID:
XP_054462774
LinkDB
All DBs
Position
11:complement(13673174..13680770)
Genome browser
AA seq
939 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPSVPPNPNTSFGAPGSSGYGKGQQLPSFYKIGT
KRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEVE
SQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGMTLEEEDENIDYD
SDGNPIAPAAKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSSLNGTQVLELRHKLNLRV
SGAAPPKPSTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGK
TAAFIWPMLVHIMDQKELEPGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGG
GSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVRS
VASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQIVEMLHSATD
KWSWLTRRLVEFTSSGSVLIFVTKKSNCEELATNLTQEGYSLGLLHGDMDQSERNKVISD
FKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT
NKDTTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKSGKGKKLNIGGGGLGYRER
PGLGAESSERSGNFLSSTSSFEGYSKPTSGAMGDRMSAMKQAFQAQYKSHFVAASSGPPK
LTTKSNSSSCWTSAGSLSSVPTESANGPERSQSATLSMSMPMPGFTSAGSLSSVPTSQTS
SQHSFPPPAPPPQRDIPRERHGEDRGRQDSYRHSDRGDRHGGEDRYGDRERHGDRDRDRH
GDRERHSSSRNSEGRNGEGSRRDREDRRSERDGGEGRDREDRRVERDGGDRGSAEGRERE
DRRSERDGGDRGSVEGRDRGDDSFAVPEPPKRRKSRWDN
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccaggtgtgaagcgagggtttggatttggaggattttcc
cttgcagggaaaaaagaagaacctagtgttcctccgaacccaaacacatcatttggagcc
cctggatcaagtggatatgggaagggccagcagctcccatctttctacaaaatagggaca
aaaagagccaattttgatgaggaaaatgcgtattttgaggatgatgaagaggagtccagc
agcaatgttgatctgccgtacatcccagctgagaactcgcccacacggcagcagatgcag
tctggtggtgggtcagacagtgaagatgacccactggacgccttcatggcagaggttgag
agccaagcagctaaagacatgaggaaactagaggaaaaggaaaaggagaaaaagtcagcc
aagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctacatg
gcagagaatcccacagccgggatgaccctagaggaggaggatgaaaatattgactatgac
agtgacgggaacccaatcgcacccgccgccaagaaaatcatcttgccgcttccccccatt
gaccattctgagattgattacccaccctttgagaaaaacttttacaatgagcatgaagag
ctcagcagcctgaatggaactcaagtgttggagttaaggcacaaattgaatttacgggta
tctggtgccgcccctccaaaaccttctactagctttgcccacttcaactttgatgagcag
ttaatgcaccaaatccgcaagtccgagtacactcagcccacaccgattcagtgccagggt
gtgcccatagctctgtctggacgtgacatgattggtattgcaaaaactggaagtggaaaa
actgcagcttttatctggcccatgctggttcacatcatggaccaaaaggaactggagcca
ggagaggggccgatcgccatcattgtgtgtcccaccagagagctttgtcagcagatccat
gcagaatgtaagcgttttgggaaagcttactctttgcgttctgtggcagtttatggagga
ggcagcatgtgggagcaggccaaagctctgcaggagggagcagagattgtggtgtgcact
ccgggtcgcctgattgaccatgtgaagaagaaggccacgtcccttcagagagtgtcatac
ctggtgtttgatgaggcggatcgcatgtttgatatgggtttcgaatatcaggttagatct
gttgctagccatgtccgcccagacagacagacgcttctgtttagtgctactttccgaaag
aagatagaaaggcttgccagagacatcttggtcgaccctatccgtgtggtgcagggagac
atcggagaggccaatgaggatgtcacccagattgtggagatgctgcacagcgcgacagat
aaatggagctggcttacccggcggctggtggagttcacctcctccggatcagtcctcatc
tttgtcactaagaagtcaaactgtgaggaactggctactaacctgacccaggagggctac
agcctgggcctcctgcacggagacatggaccagagtgagaggaacaaggtcatcagcgac
ttcaagaagaagaatttgcctgttctggtggccactgatgtagctgctcgtggtctggac
atcccatccattcgcacagtggtaaactacgatgtggcacgagacatcgacacgcacaca
cacaggattggtcgaactggtcgcgctggagagaagggcgtggcttacactctcctcacc
aacaaagacaccacgttcgctggtgacctcgttcgaaatctagagggagccaatcaagcc
gtttccaaagaactgatggatttagccatgcagaatccctggttcaggaaatccagattc
aagagtgggaaaggaaagaagctgaatattggcggaggtggtcttggttacagagagaga
cccggcctgggggctgaaagttctgaacgcagcggcaactttttgtcttccactagtagc
tttgaaggctacagcaaaccaaccagtggggcaatgggagatcgcatgtctgctatgaaa
caagccttccaggctcagtataagagccactttgtagctgcgtccagcggccctccgaag
ctcaccactaagtccaacagctcgtcatgctggactagtgccggcagcttgagctctgtg
ccgaccgagtccgccaatggcccagagcggtcccagagcgccaccttgtccatgtccatg
cccatgcctggcttcaccagcgctggctccctgagctccgtgcccaccagtcaaaccagt
tcacagcacagcttccctcctcccgcacctcccccacagagagacatccctcgggaaagg
cacggggaggaccgggggcgccaagacagttaccgccacagcgacaggggcgatcgacac
gggggagaggatcgctacggagaccgggagcgccacggagaccgagatcgcgaccgccac
ggggaccgggagcgccacagcagcagccgcaatagcgaaggtcgtaatggagagggaagc
aggagggacagagaggatcgtaggagtgagagggacgggggtgaggggagggacagagaa
gatcgtagggttgaaagggacgggggagacagggggagtgcagagggaagggagagagaa
gatcggaggagtgagagggacgggggagacagggggagtgtagaggggagggatagagga
gatgatagctttgctgtccccgaaccaccaaagcgtagaaagagtcggtgggacaactaa
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