Anoplopoma fimbria (sablefish): 129098036
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Entry
129098036 CDS
T09102
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129098036 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
129098036 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129098036 (thoc6)
03041 Spliceosome [BR:
afb03041
]
129098036 (thoc6)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
129098036 (thoc6)
Spliceosome [BR:
afb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129098036 (thoc6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_NOL10_N
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_SCAP
WD40_Gbeta
NBCH_WD40
EIF3I
TRM82_WD
CFAP251_N
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
DSE1_N
Beta-prop_ACSF4
Beta-prop_IP5PC_F
WD40_like
Beta-prop_WDR41
WDR54
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
129098036
NCBI-ProteinID:
XP_054462956
LinkDB
All DBs
Position
11
Genome browser
AA seq
326 aa
AA seq
DB search
MSRMGPVKLLHMSVFSQSFSPCGRFLAAGNNYGEIGVFSLSAALSPDATALSQKPVLTFT
AHDGPVFSLLSTDCQLLSAGNGEISCWSWSELIKKNVKALWTKRPNYKSSLEIPEINSMI
INHRDNSLVFGGGDNNVHILDLEHGVFKSVLQGHSDYVHCVSVRDREAEILSGGEDGAVR
VWDSRTGQSVHCIEVYKYESCARPQYGKWISCLTTDSDWMLCGGGPSLSLWHLRSLSPTS
VFPLTGCQRQTAFYQDMILAVGEGPAVSHCLLGGEVKAQIPCTPQSLNTLQLNTNSTEHR
VLTVGGSSDHIDVFTNLSYRTFSLSF
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggatgggtcccgtgaagctcctccacatgtccgtcttctctcagagcttctct
ccctgcggtcggttcctggcagctggaaacaactacggagagatcggagtgttcagcctg
tctgcagctctgagtccagacgccacagccctgagtcagaaacctgtcctgacgttcaca
gctcatgacggccccgtgttctcgctcctctccaccgactgtcagctgctcagcgccggg
aacggagagatcagctgctggagctggagcgagctcatcaagaagaatgtcaaagctctg
tggacgaaaagaccaaactacaaatccagtctggagatcccagagatcaactccatgatc
atcaaccacagagacaacagtctggtcttcggcggaggagacaacaacgtccacatcctg
gacctggagcacggagtcttcaagtccgtcctgcagggtcactctgactacgtccactgt
gtgagcgtgagggacagggaggcagagatcctgtcggggggggaggacggagccgtgagg
gtgtgggacagccggacgggtcagtctgtccactgcatcgaggtctacaagtacgagagc
tgtgctcggcctcagtacgggaaatggatcagctgtctgacgaccgactctgactggatg
ctgtgtggtggaggtccgtctctgtctctgtggcatctccgctctctgtctccgacctcc
gtcttccctctgaccggctgccagagacagaccgccttctaccaggacatgatcctggcg
gtgggtgaaggcccggcggtgtctcactgtctgctgggtggagaggtcaaagctcagatc
ccgtgtacgccacagagcctcaacacgctgcagctcaacaccaacagcaccgagcacagg
gtgctgacggtcggaggaagcagtgatcacatcgacgtgttcaccaacctgtcgtacaga
acgttctcactcagcttctga
DBGET
integrated database retrieval system
