Anoplopoma fimbria (sablefish): 129098113
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Entry
129098113 CDS
T09102
Symbol
rad23aa
Name
(RefSeq) RAD23 homolog A, nucleotide excision repair protein a
KO
K10839
UV excision repair protein RAD23
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03420
Nucleotide excision repair
afb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129098113 (rad23aa)
09124 Replication and repair
03420 Nucleotide excision repair
129098113 (rad23aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
afb03051
]
129098113 (rad23aa)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129098113 (rad23aa)
Proteasome [BR:
afb03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
129098113 (rad23aa)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
129098113 (rad23aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Rad60-SLD_2
UBA_3
Crinkler
Dsc3_N
Ubiquitin_2
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
129098113
NCBI-ProteinID:
XP_054463059
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Position
11:complement(20760818..20766215)
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AA seq
365 aa
AA seq
DB search
MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK
DYNIDEKNFVVVMVSKAKPAAAASTPASEAPKPPVQDSGSTSTAVPATTTASAPTPAAVP
VPSEEAKEEPSAAATEPPPQQPASSSGGGQGLDASSALVTGAEYEAMLTEIMSMGYERER
VVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPAQAPASGPTEAPSLAEGENPLAFLRT
QPQFLHMRQAIQQNPTLLPALLQQLGRENPQLLQQISQHQELFIQMLNEPVGEGGDAPEV
GELGAAGEEGAPVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ
GLEDD
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcacgcttaaaacgctgcagcagcagactattcagatcgagatagaccccgag
cagacggtgaaggccttaaaagagaagatagaagcagaaagagggaaagacaacttccct
gtgtccgggcagaagctgatatatgctggaaaaatcctgcaggatgacacgcccattaaa
gattacaacattgatgagaagaattttgtggtggtgatggtttcaaaggctaaacccgca
gctgccgcctcgaccccggcctcggaagcccccaagccccctgtacaggactctggctcc
acgtcaacagctgtcccggccacaaccacagcttcagccccgaccccggcagctgtcccc
gttccctctgaggaggccaaagaagagccaagtgccgcagccacagaaccaccaccacaa
caaccagccagctccagcggtgggggtcagggcttggatgcctcctcagcactggtgact
ggagcagagtacgaggccatgctcacagagatcatgtcgatgggctatgaaagggagaga
gtggtggccgcgctacgggccagtttcaacaacccccatagagctgtggagtaccttctc
actggtatccccagcagcccagtccaggagagtaatcccccagcacaggcccctgcgtct
ggacccacagaagccccgtctctagcagagggagagaacccacttgcattcctgcggacc
cagccccagtttctgcacatgagacaggccatccagcagaaccccactctgctaccagct
ctactccagcaactaggccgagagaatcctcaacttctacagcaaatcagtcagcatcag
gagctgttcatccagatgttgaacgagccagtgggagagggaggagatgcgccagaagtt
ggagagttgggggcagcaggggaggagggcgcacctgtcaactatatccaggttacacct
caggagaaggaagccatcgaaaggttaaaagcgttgggtttccccgaggctctggtgatc
caggcctactttgcctgcgagaagaacgagaacctggccgccaactttctcctcaaccag
ggactggaagacgactga
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