Anoplopoma fimbria (sablefish): 129098236
Help
Entry
129098236 CDS
T09102
Symbol
ciita
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
afb01001
]
129098236 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
afb04054
]
129098236 (ciita)
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
129098236 (ciita)
Protein kinases [BR:
afb01001
]
Serine/threonine kinases: Other
TAF1 family
129098236 (ciita)
Pattern recognition receptors [BR:
afb04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
129098236 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
AAA_16
LRR_14
NLRC4_HD2
nSTAND3
nSTAND_NTPase5
NPHP3_N
AAA_22
TsaE
NB-ARC
AAA
SRP54
Motif
Other DBs
NCBI-GeneID:
129098236
NCBI-ProteinID:
XP_054463197
LinkDB
All DBs
Position
11:complement(5917756..5931327)
Genome browser
AA seq
1219 aa
AA seq
DB search
MQDVDQDPFICPFLGDLPDDLSEFLNDEYLGKFLVPDLDTDVLFDDPCLNCDDELSTCSA
LPMPTELFGPDSHQQEQEDKKTGKTNNRRKRPRVARSQHCTDENTPSRPKRQRAAGRTKT
KVAHSEPSVTQGTDSGSEPSAAEKVGVSTSPPRILHLHPSIQFVTIPETQQYKVVHTLRL
SHPVIGVPLPNTAASPTFILVPADSPSFQRRVPPLSPMDGAVAPVQMSSPPPGSLSDTAS
KAMSPSCVSPLSPNKEMSPCKESPLPQSPTVVEIPHVVQDYIQEAKAYMSHTCQDMEAGL
SLTSHYVDVKVSQREILRSGKNTNKVLDKELVITGDTDRQNSLLGLSQIFEGSNGDKPKS
YILLLGNAGMGKTTLIRKLCLDWSRNCLPQFDFVFFLDGKTLSLSEATYSLQTLLLNFSS
FAPSCMDPEAVYAQILAAPKRVLIIFDGFDGLRDYEILLQTQEKDLITSLHKDSKAQTYT
VRQLYSAILQRFLLPGCTLLLSTRPRGTAIQLLKRTDSLLEVCGFTPTQVETYLSQYFTD
PDLRAPALNCLKNCSYLQLLCWNPGLCQLVCLVLEQCKSLEDLPRTLTGLCHQVLRLELE
KESRSTHSEAETQSEESVQSVAKPHSSSQGNRRRKNTQTKARALVRTRSHMQIDKEDDDF
IREGMKSVGGEVHRTDGELLSQLSSLAWKGIKANSSILPTGRTISAKLQAFGQRTGLFFF
YSLRTRQVVSGEEREGVEREDREEVGTRKNGEKLGXKGGTSAESTDTSDDLILLWANPFL
QSYLAAVHLSLSRTVTDRAFIQTLPFQSCQKGRRRPQREELELTQRFAVGLLFHDRRELQ
RLHSYTETSFREMVAAKQALVTKHIEGLSDGDLSPAQVLEACHYVYEASSTHGLGSRDSG
STRLVAHLAEVLPKDLTFHGVPLRPSDVFAVQNVLERGGTKGKRFCLDLEDSGIQIAGLR
ALVGLNNINTYRACIADVITLWEQLERSGEEVLLQETVSKFKINPLKATQVCHIEHLAKL
VNIHTHKRLSDSSSQSDSILAEGVPAVKELHQLEFELGPEKGPLALPKLWELLPGLHNLQ
HLDLENSKIGDQGAEKLADALVSLGSLEKLNLSQNCIGDQGVKKLATTLRELPKLHSLSL
YSNEISDEGAESLAAVLPHVASLTDLDVKYNKLTDVGARSLGASLSNCKKMKTLRMWNQC
IPYGVLERLQQQDHRILWQ
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatgtggatcaggacccgtttatctgtcctttcttgggagatctaccagatgat
ttatctgaattcttgaatgatgaatacctggggaagtttttggttcctgacctagacaca
gatgtgctctttgatgatccatgtttgaattgtgatgacgaactcagcacctgcagtgct
ctacccatgccaacagagctgttcggcccagacagccaccagcaggaacaggaggacaaa
aaaacaggcaaaacaaataacaggagaaaaagacccagagttgcacggtcacaacattgc
actgatgagaacacaccgtcacggccaaaaagacaaagagcagcaggtcgaacaaaaacc
aaagttgcacactctgagccatctgtcactcaaggaactgactcagggtcagagccgagt
gcagcagagaaggtaggcgtctccacctctccaccaagaatccttcatctccatccctcc
attcagtttgtcaccatcccagaaactcaacaatataaggttgttcacacactgaggctc
tctcatccggttatcggagtcccactccccaatacagctgcttcacctactttcatatta
gttcccgctgactcgccatccttccaacggcgagtgccaccgctctccccaatggacgga
gcagtagcgccagtccaaatgagttcacccccacctggatctctgtcagacaccgctagc
aaagccatgtctcccagttgcgtctcacccctctcccccaacaaagagatgtctccatgt
aaggaatcaccgcttcctcagtctcccactgtcgtcgaaattccacatgttgtacaagac
tacattcaggaagcaaaagcatacatgagtcacacctgccaggatatggaggcaggcctt
agtttgacttctcattacgtagatgtgaaagtgagccagagagagattcttcgctctgga
aaaaacaccaacaaagtcctggacaaggaactagtcattacgggggatacagatcggcaa
aacagcttgttggggctcagtcagatattcgagggctcaaatggagacaaaccaaaaagc
tacatattgctactcggcaacgctggcatgggaaaaaccaccctgatcagaaaactgtgt
cttgactggtccagaaactgcctcccacagttcgactttgtcttctttttagacggcaaa
accctctctttatcagaggcgacctatagccttcagacccttctattaaacttctcctct
tttgctccttcctgcatggacccagaggcagtttatgctcaaattctcgcagcccctaag
cgtgtgctcatcatttttgatgggtttgacgggttgcgggactatgaaattctgctccag
actcaagaaaaggacttgataacgtcattgcacaaagacagtaaagcacaaacctacaca
gtaagacagttatattctgccatccttcagcggttcctccttccaggctgcactcttctg
ctctccactcgaccaagaggcactgccattcagctactcaagcggacggacagtctattg
gaggtgtgtggattcacccctacacaagtagagacatatttgtcccagtacttcactgat
cctgacctcagagcacctgctttgaactgtttaaaaaactgcagctatctacaactcctc
tgttggaaccctggactatgtcagttggtctgcttggttttagaacagtgcaaaagtttg
gaggacctaccgagaactttaacagggctctgtcatcaagtgcttcgcctggaactggaa
aaggagagtaggagcacacactccgaggcggaaactcaatcagaagaatctgtgcaatca
gtagcaaaaccgcattcaagttctcaagggaataggcgtcgcaaaaacactcagacaaag
gccagagctctggttcgcactcgctctcatatgcaaatcgataaagaggacgatgacttt
attagggaggggatgaagagtgttggcggggaagtacatagaacagatggagagctgttg
tcccagctgagttctctggcctggaagggcatcaaagcaaactcctcaatcctccccact
ggacggaccatatctgccaaactccaggcgttcggacaaaggacggggcttttcttcttt
tacagcctgaggaccaggcaggtcgtctcaggggaggagagagagggagtagaaagagag
gacagagaagaagtgggaacacgaaagaatggagaaaagttggganaaaagggcgggacg
tctgcggaaagcactgatacaagtgatgaccttatcttgttgtgggccaaccctttcctt
cagagttacctggcagcggttcatctgtctctgtcaaggaccgtaacagaccgggccttc
atccagaccctccctttccaatcttgccagaagggacgtcggcggcctcagagggaggag
ctcgagctcactcagcgatttgctgtcgggctcctgttccatgacaggagagagctgcag
aggcttcactcatacacagagacatccttcagagagatggtggccgccaagcaggcttta
gtaacaaaacacattgagggtctttccgatggtgacctgagccctgcccaggtcctggag
gcttgtcactatgtttatgaggcgagttccacgcatggccttggcagcagagacagtggc
agcacgcgattagtcgctcacttggcagaagttcttccaaaagacctgacatttcatgga
gttccactcagaccgtcggacgtgttcgctgtgcagaacgttctcgaaaggggtggaact
aaaggaaagaggttctgtttggatctggaggattctgggatacagattgcaggactcaga
gctctggtggggctcaacaacatcaacacatatagggcatgcattgctgatgtaatcacc
ttatgggagcagcttgagcggagtggcgaagaagtgctcctacaagagacggtgtccaaa
ttcaagatcaatcctctgaaggccacacaggtgtgtcacatagagcacctggcaaagctg
gtgaacattcatacgcacaagaggctgtcggacagttccagccaatcagattccatcctg
gcagagggagtaccagctgtcaaagagctgcaccagctggagttcgagcttggtccagaa
aaaggtcccctggctcttcccaagctttgggagctcctgccaggtctacataacctacag
cacttagatctagagaacagcaagataggggaccaaggagcagagaaattggccgatgct
ttggtctcacttggttccctggagaaactcaatctctcacagaattgtataggagaccag
ggggttaagaaactagcaaccacgctgagggaactgcccaaactgcacagtttaagtctc
tacagtaacgagatttctgatgaaggggcggagagtttagcagctgtccttccgcatgtg
gcttcgctcactgacttggacgtaaagtataataagctaacagacgttggagcacggagc
ttgggagccagtctgagtaactgtaaaaaaatgaagacactgaggatgtggaaccagtgt
attccatacggagtgcttgagaggcttcagcagcaggaccaccggatcctttggcagtag
DBGET
integrated database retrieval system
