Anoplopoma fimbria (sablefish): 129098401
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Entry
129098401 CDS
T09102
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129098401 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129098401 (ddx5)
03009 Ribosome biogenesis [BR:
afb03009
]
129098401 (ddx5)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129098401 (ddx5)
Spliceosome [BR:
afb03041
]
Complex A
U1 snRNP components
U1 related factors
129098401 (ddx5)
Complex B
129098401 (ddx5)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
Pre-60S particles
Helicases
129098401 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129098401
NCBI-ProteinID:
XP_054463377
LinkDB
All DBs
Position
11:22775993..22782295
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AA seq
625 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGGGPPRFGGNRGGGGGGGGKFGNPGERLRKKQWNMDELPKF
EKNFYQQHPDVARRSPQDVEQYRRSKVITFKGRECPNPIAKFHEAAFPSYVMDVINKMNW
SEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLES
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLIAVLREANQAINPKLLQM
AEDRGGRSRGGRGGDYRDDRRDRYSGRRDFGSFRDRDNGRGFENGPNKAFGTNTQNGGYG
GNNNGGGGGNGFSGSSYNGNGQSNFNNQAGAFGGQNFQAQQFAIPKGGAQTGASHPPFPF
PQAQAPPQQHPPPLVPYPMPPQFSQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtattccgacagagatcgcggccgggacagagatagaggctatggcggcggc
ggcggtcctcctcgctttggaggaaaccgtggcggaggtggaggaggaggaggaaagttc
gggaatccaggtgaaagactgcggaagaagcagtggaacatggacgagctcccaaagttt
gagaagaacttctaccagcagcaccccgacgttgcccggaggtccccgcaagacgttgaa
caatacagaaggtccaaagtaattacatttaaggggagggaatgcccaaatcctattgcc
aagttccacgaggccgcctttccatcttacgtgatggatgtgatcaacaaaatgaactgg
agcgaaccaacacccatccaggctcaaggctggcccctggccctcagtggcaaggacatg
gtcggcattgctcagactggctctggcaagacgctttcctatttgttacctgcaattgtg
cacatcaaccaccagcctttcctggagcgtggagatggccccatctgcttggtgttagcc
cccacccgtgagctggcacagcaggtgcaacaggtggctgcagaatatggcagagcttct
cgcctgaaatccacctgcatctacggaggggcccccaagggaccccagatccgtgacctg
gaaagaggtgtggagatctgcattgccactccaggaaggctcatcgacttccttgagtca
ggaaaaacaaacctccgtaggtgcacttatcttgtgctggatgaggccgacagaatgctt
gacatgggctttgagcctcagatccggaaaattgtagaccaaatcagacctgaccgccag
actctgatgtggagtgccacttggcccaaagaggttcgtcagctagcagaggacttcctc
aaggagtacgtccagatcaatgttggggcgctgcagctcagtgccaaccacaacatcctg
caaatcgtggatgtctgtaatgatggagagaaggagaacaagctaatccgtctgcttgag
gaaatcatgagtgagaaggagaacaagaccatcatctttgtagagacaaagaggcgctgt
gatgatctcaccaggaggatgagaagggatgggtggccagctatgggaatccatggagat
aagagccagcaggaaagagactgggtactcaatgagttcaaatatggaaaggctccaata
ctcattgctacagatgttgcctccagaggtctagatgttgaagatgtgaaatttgtcatc
aactttgactaccccaacaactctgaggactatatccaccgcattggccgaacagctcgt
agccaaaagacaggcacggcttacaccttcttcactccaaacaacatgaggcaggccagt
gacctcatcgctgtgctccgcgaggccaaccaggcgatcaaccccaagctcctccaaatg
gcggaagacagaggaggtcgttcaaggggaggcagaggtggtgattacagagacgaccgt
cgggataggtattctggaaggcgtgattttggcagttttagggaccgggataatggtaga
gggtttgaaaacggaccaaataaagcctttggcacaaatacgcagaacggaggctatggg
ggaaacaacaatggcggcggcggcggcaacggcttcagtggaagcagttacaatggtaat
ggacagtccaactttaacaaccaagctggagccttcggaggccagaatttccaggcccaa
cagtttgccatccctaagggtggcgcacagactggtgcaagtcatcccccattccccttc
ccccaggcacaggctccacctcagcagcatcctccaccgctggtgccataccccatgcct
cctcagttctctcagtaa
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